Difference between revisions of "TSS:Hg 232488.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000360059.5:74 AK301721:83 AK302219:-131 BC033784:-133 AF325353:-152 KJ898511:-155 ENST00000491635.1:-170 AK097093:-170 AK295231:-170 AK001548:-170 AK222861:-170 BC038975:-173 AF120334:-175 BC021243:-182 BC008683:-185 ENST00000360803.9:-198 NM_012341:-198 AK001552:-223 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| − | |distance= | + | |distance=74 |
| − | |distance_to_tss= | + | |distance_to_tss=20 |
|end=97292626 | |end=97292626 | ||
|end_of_center_position=988632 | |end_of_center_position=988632 | ||
| Line 10: | Line 11: | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=Rho GTPase activating protein 19 | |gene_description=Rho GTPase activating protein 19 | ||
| − | |gene_name= | + | |gene_id=23560 |
| + | |gene_name=GTP binding protein 4 | ||
| + | |gene_source=HGNC:21535 | ||
| + | |gene_symbol=GTPBP4 | ||
| + | |gene_synonyms=CRFG FLJ10686 FLJ10690 NGB NOG1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:21535 | ||
|nearest_ensembl=ENSG00000213390 | |nearest_ensembl=ENSG00000213390 | ||
|nearest_promoter_id=NM_032900 | |nearest_promoter_id=NM_032900 | ||
|nearest_refseq=NM_032900 | |nearest_refseq=NM_032900 | ||
|nearest_unigene=Hs.80305 | |nearest_unigene=Hs.80305 | ||
| − | |num_trans= | + | |num_trans=18 |
|species=human | |species=human | ||
|start=97292608 | |start=97292608 | ||
|start_of_center_position=988631 | |start_of_center_position=988631 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000360059.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_232488.1 | |tss_id=hg_232488.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=Q5T3R7 | ||
}} | }} | ||
Revision as of 12:25, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 988631 |
|---|---|
| End of the center position in the TSS region: | 988632 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000360059.5 |
|---|---|
| Distance: | 74 |
| Num_trans: | 18 |
| All_trans: | ENST00000360059.5:74 AK301721:83 AK302219:-131 BC033784:-133 AF325353:-152 KJ898511:-155 ENST00000491635.1:-170 AK097093:-170 AK295231:-170 AK001548:-170 AK222861:-170 BC038975:-173 AF120334:-175 BC021243:-182 BC008683:-185 ENST00000360803.9:-198 NM_012341:-198 AK001552:-223 |
TATA-Box annotation
| Distance to TSS: | 20 |
|---|---|
| Nearest PromoterID: | NM_032900 |
| Entrez ID: | 84986 |
| Nearest Unigene: | Hs.80305 |
| Nearest Refseq: | NM_032900 |
| Nearest Ensembl: | ENSG00000213390 |
| Gene Name: | GTP binding protein 4 |
| Gene Alias: | - |
| Gene Description: | Rho GTPase activating protein 19 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
