Difference between revisions of "TSS:Hg 232823.1"
From referenceTSS
| Line 3: | Line 3: | ||
|LDHM= | |LDHM= | ||
|PIG19= | |PIG19= | ||
| + | |all_trans=AB528342:-83 KJ897262:-84 KR710208:-84 DQ893115:-87 DQ896389:-87 EU176780:-87 M30262:-176 ENST00000376480.7:-181 ENST00000610706.1:-181 NM_006172:-181 BC005893:-181 K02044:388 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance= | + | |distance=-83 |
|distance_to_tss=628 | |distance_to_tss=628 | ||
|end=18396900 | |end=18396900 | ||
| Line 11: | Line 12: | ||
|entrez_id=3939 | |entrez_id=3939 | ||
|gc_percent=0.412935 | |gc_percent=0.412935 | ||
| − | |gene_alias=GSD11 | + | |gene_alias=GSD11{{!}}HEL-S-133P{{!}}LDHM{{!}}PIG19 |
|gene_description=lactate dehydrogenase A | |gene_description=lactate dehydrogenase A | ||
| − | |gene_name= | + | |gene_id=4878 |
| + | |gene_name=natriuretic peptide A | ||
| + | |gene_source=HGNC:7939 | ||
| + | |gene_symbol=NPPA | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:7939 | ||
|nearest_ensembl=ENSG00000134333 | |nearest_ensembl=ENSG00000134333 | ||
|nearest_promoter_id=NM_001165414 | |nearest_promoter_id=NM_001165414 | ||
|nearest_refseq=NM_005566 | |nearest_refseq=NM_005566 | ||
|nearest_unigene=Hs.2795 | |nearest_unigene=Hs.2795 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=18396887 | |start=18396887 | ||
|start_of_center_position=11847598 | |start_of_center_position=11847598 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=AB528342 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_232823.1 | |tss_id=hg_232823.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 12:33, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 11847598 |
|---|---|
| End of the center position in the TSS region: | 11847599 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB528342 |
|---|---|
| Distance: | -83 |
| Num_trans: | 12 |
| All_trans: | AB528342:-83 KJ897262:-84 KR710208:-84 DQ893115:-87 DQ896389:-87 EU176780:-87 M30262:-176 ENST00000376480.7:-181 ENST00000610706.1:-181 NM_006172:-181 BC005893:-181 K02044:388 |
TATA-Box annotation
| Distance to TSS: | 628 |
|---|---|
| Nearest PromoterID: | NM_001165414 |
| Entrez ID: | 3939 |
| Nearest Unigene: | Hs.2795 |
| Nearest Refseq: | NM_005566 |
| Nearest Ensembl: | ENSG00000134333 |
| Gene Name: | natriuretic peptide A |
| Gene Alias: | GSD11|HEL-S-133P|LDHM|PIG19 |
| Gene Description: | lactate dehydrogenase A |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.412935 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
