Difference between revisions of "TSS:Hg 233712.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000375375.7:-147 X96743:-147 ENST00000420770.7:-307 NM_002584:-307 NM_013945:-307 NM_001135254:-307 Z35141:349 DQ322591:368 ENST00000400661.3:371 BC121165:371 BC121166:371 KJ897296:451 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| − | |distance=- | + | |distance=-147 |
|distance_to_tss=44038 | |distance_to_tss=44038 | ||
|end=82689833 | |end=82689833 | ||
| Line 11: | Line 11: | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=family with sequence similarity 181 member B | |gene_description=family with sequence similarity 181 member B | ||
| − | |gene_id= | + | |gene_id=5081 |
| − | |gene_name= | + | |gene_name=paired box 7 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:8621 |
| − | |gene_symbol= | + | |gene_symbol=PAX7 |
| − | |gene_synonyms= | + | |gene_synonyms=Hup1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:8621 |
|nearest_ensembl=ENSG00000182103 | |nearest_ensembl=ENSG00000182103 | ||
|nearest_promoter_id=NM_175885 | |nearest_promoter_id=NM_175885 | ||
|nearest_refseq=NM_175885 | |nearest_refseq=NM_175885 | ||
|nearest_unigene=Hs.448218 | |nearest_unigene=Hs.448218 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=82689819 | |start=82689819 | ||
|start_of_center_position=18631152 | |start_of_center_position=18631152 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000375375.7 X96743 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_233712.1 | |tss_id=hg_233712.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=P23759 |
}} | }} | ||
Revision as of 12:53, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 18631152 |
|---|---|
| End of the center position in the TSS region: | 18631153 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000375375.7 X96743 |
|---|---|
| Distance: | -147 |
| Num_trans: | 12 |
| All_trans: | ENST00000375375.7:-147 X96743:-147 ENST00000420770.7:-307 NM_002584:-307 NM_013945:-307 NM_001135254:-307 Z35141:349 DQ322591:368 ENST00000400661.3:371 BC121165:371 BC121166:371 KJ897296:451 |
TATA-Box annotation
| Distance to TSS: | 44038 |
|---|---|
| Nearest PromoterID: | NM_175885 |
| Entrez ID: | 220382 |
| Nearest Unigene: | Hs.448218 |
| Nearest Refseq: | NM_175885 |
| Nearest Ensembl: | ENSG00000182103 |
| Gene Name: | paired box 7 |
| Gene Alias: | - |
| Gene Description: | family with sequence similarity 181 member B |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
