Difference between revisions of "TSS:Hg 234684.1"
From referenceTSS
| Line 2: | Line 2: | ||
|SECP43= | |SECP43= | ||
|TRSPAP1= | |TRSPAP1= | ||
| + | |all_trans=NR_024540:-4 ENST00000488147.1:-204 | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=-4 |
|distance_to_tss=-14286 | |distance_to_tss=-14286 | ||
|end=28538740 | |end=28538740 | ||
| Line 10: | Line 11: | ||
|entrez_id=54952 | |entrez_id=54952 | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
| − | |gene_alias=PRO1902 | + | |gene_alias=PRO1902{{!}}SECP43{{!}}TRSPAP1 |
|gene_description=tRNA selenocysteine 1 associated protein 1 | |gene_description=tRNA selenocysteine 1 associated protein 1 | ||
| − | |gene_name= | + | |gene_id=653635 |
| + | |gene_name=WASP family homolog 7, pseudogene | ||
| + | |gene_source=HGNC:38034 | ||
| + | |gene_symbol=WASH7P | ||
| + | |gene_synonyms=FAM39F | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:38034 | ||
|nearest_ensembl=ENSG00000180098 | |nearest_ensembl=ENSG00000180098 | ||
|nearest_promoter_id=NR_003109 | |nearest_promoter_id=NR_003109 | ||
|nearest_refseq=NM_017846 | |nearest_refseq=NM_017846 | ||
|nearest_unigene=Hs.533626 | |nearest_unigene=Hs.533626 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=28538721 | |start=28538721 | ||
|start_of_center_position=29356 | |start_of_center_position=29356 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NR_024540 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_234684.1 | |tss_id=hg_234684.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 13:16, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 29356 |
|---|---|
| End of the center position in the TSS region: | 29357 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NR_024540 |
|---|---|
| Distance: | -4 |
| Num_trans: | 2 |
| All_trans: | NR_024540:-4 ENST00000488147.1:-204 |
TATA-Box annotation
| Distance to TSS: | -14286 |
|---|---|
| Nearest PromoterID: | NR_003109 |
| Entrez ID: | 54952 |
| Nearest Unigene: | Hs.533626 |
| Nearest Refseq: | NM_017846 |
| Nearest Ensembl: | ENSG00000180098 |
| Gene Name: | WASP family homolog 7, pseudogene |
| Gene Alias: | PRO1902|SECP43|TRSPAP1 |
| Gene Description: | tRNA selenocysteine 1 associated protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
