Difference between revisions of "TSS:Hg 235229.1"
From referenceTSS
| Line 2: | Line 2: | ||
|U5DL= | |U5DL= | ||
|U5DS= | |U5DS= | ||
| − | |all_trans= | + | |all_trans=ENST00000554558.6:133 ENST00000412224.6:138 AK124927:138 ENST00000663990.1:144 ENST00000535211.1:152 NR_027123:156 JX046911:156 JX628584:156 ENST00000335142.5:174 BX248296:174 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| − | |distance= | + | |distance=133 |
|distance_to_tss=-3 | |distance_to_tss=-3 | ||
|end=44731175 | |end=44731175 | ||
| Line 11: | Line 11: | ||
|entrez_id=26830 | |entrez_id=26830 | ||
|gc_percent=0.40796 | |gc_percent=0.40796 | ||
| − | |gene_alias=RNU5D | + | |gene_alias=RNU5D{{!}}U5DL{{!}}U5DS |
| − | |gene_description= | + | |gene_description=RNA, U5D small nuclear 1 |
| − | |gene_id= | + | |gene_id=100129075 |
| − | |gene_name= | + | |gene_name=KTN1 antisense RNA 1 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:19842 |
| − | |gene_symbol= | + | |gene_symbol=KTN1-AS1 |
| − | |gene_synonyms= | + | |gene_synonyms=MYCLo-3 |
|gene_type=snRNA | |gene_type=snRNA | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:19842 |
|nearest_ensembl=ENSG00000200169 | |nearest_ensembl=ENSG00000200169 | ||
|nearest_promoter_id=NR_002755 | |nearest_promoter_id=NR_002755 | ||
|nearest_refseq=NR_002755 | |nearest_refseq=NR_002755 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=44731166 | |start=44731166 | ||
|start_of_center_position=55580255 | |start_of_center_position=55580255 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000554558.6 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_235229.1 | |tss_id=hg_235229.1 | ||
Revision as of 13:28, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 55580255 |
|---|---|
| End of the center position in the TSS region: | 55580256 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000554558.6 |
|---|---|
| Distance: | 133 |
| Num_trans: | 10 |
| All_trans: | ENST00000554558.6:133 ENST00000412224.6:138 AK124927:138 ENST00000663990.1:144 ENST00000535211.1:152 NR_027123:156 JX046911:156 JX628584:156 ENST00000335142.5:174 BX248296:174 |
TATA-Box annotation
| Distance to TSS: | -3 |
|---|---|
| Nearest PromoterID: | NR_002755 |
| Entrez ID: | 26830 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_002755 |
| Nearest Ensembl: | ENSG00000200169 |
| Gene Name: | KTN1 antisense RNA 1 |
| Gene Alias: | RNU5D|U5DL|U5DS |
| Gene Description: | RNA, U5D small nuclear 1 |
| Gene Type: | snRNA |
| CpG%: | 0.035 |
| GC%: | 0.40796 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
