Difference between revisions of "TSS:Hg 236126.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=BC036671:1 ENST00000675812.1:-12 NM_198681:-30 ENST00000377740.5:53 AK096347:53 | ||
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| − | |distance= | + | |distance=1 |
|distance_to_tss=-440 | |distance_to_tss=-440 | ||
|end=30377876 | |end=30377876 | ||
| Line 10: | Line 11: | ||
|gene_alias=ZNF553 | |gene_alias=ZNF553 | ||
|gene_description=zinc finger protein 48 | |gene_description=zinc finger protein 48 | ||
| − | |gene_name= | + | |gene_id=57449 |
| + | |gene_name=pleckstrin homology and RhoGEF domain containing G5 | ||
| + | |gene_source=HGNC:29105 | ||
| + | |gene_symbol=PLEKHG5 | ||
| + | |gene_synonyms=GEF720 KIAA0720 Syx Tech | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:29105 | ||
|nearest_ensembl=ENSG00000180035 | |nearest_ensembl=ENSG00000180035 | ||
|nearest_promoter_id=NM_001214906 | |nearest_promoter_id=NM_001214906 | ||
|nearest_refseq=NM_152652 | |nearest_refseq=NM_152652 | ||
|nearest_unigene=Hs.513501 | |nearest_unigene=Hs.513501 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=30377867 | |start=30377867 | ||
|start_of_center_position=6520061 | |start_of_center_position=6520061 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=BC036671 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_236126.1 | |tss_id=hg_236126.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 13:49, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 6520061 |
|---|---|
| End of the center position in the TSS region: | 6520062 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC036671 |
|---|---|
| Distance: | 1 |
| Num_trans: | 5 |
| All_trans: | BC036671:1 ENST00000675812.1:-12 NM_198681:-30 ENST00000377740.5:53 AK096347:53 |
TATA-Box annotation
| Distance to TSS: | -440 |
|---|---|
| Nearest PromoterID: | NM_001214906 |
| Entrez ID: | 197407 |
| Nearest Unigene: | Hs.513501 |
| Nearest Refseq: | NM_152652 |
| Nearest Ensembl: | ENSG00000180035 |
| Gene Name: | pleckstrin homology and RhoGEF domain containing G5 |
| Gene Alias: | ZNF553 |
| Gene Description: | zinc finger protein 48 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
