Difference between revisions of "TSS:Hg 236365.1"
From referenceTSS
| Line 5: | Line 5: | ||
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=36 | |distance_to_tss=36 | ||
|end=72054636 | |end=72054636 | ||
| Line 11: | Line 11: | ||
|entrez_id=3240 | |entrez_id=3240 | ||
|gc_percent=0.492537 | |gc_percent=0.492537 | ||
| − | |gene_alias=BP | + | |gene_alias=BP{{!}}HP2ALPHA2{{!}}HPA1S |
|gene_description=haptoglobin | |gene_description=haptoglobin | ||
|gene_id=3240 | |gene_id=3240 | ||
| − | |gene_name= | + | |gene_name=HP |
|gene_source=HGNC:5141 | |gene_source=HGNC:5141 | ||
|gene_symbol=HP | |gene_symbol=HP | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:5141 | |hgnc_mgi_id=HGNC:5141 | ||
|nearest_ensembl=ENSG00000257017 | |nearest_ensembl=ENSG00000257017 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001126102 |
|nearest_refseq=NM_005143 | |nearest_refseq=NM_005143 | ||
|nearest_unigene=Hs.513711 | |nearest_unigene=Hs.513711 | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
|start=72054619 | |start=72054619 | ||
|start_of_center_position=10652529 | |start_of_center_position=10652529 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-37(CAGCATAAAAAG,-,0.00),-35(GCATAAAAAGAC,+,0.00) |
| − | |transcript_name= | + | |transcript_name= |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_236365.1 | |tss_id=hg_236365.1 | ||
Revision as of 13:55, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 10652529 |
|---|---|
| End of the center position in the TSS region: | 10652530 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | ENST00000565807.6:0 ENST00000562488.5:0 ENST00000569639.5:0 ENST00000564499.5:0 ENST00000357763.8:0 ENST00000613898.1:0 ENST00000566821.1:0 ENST00000562526.5:0 ENST00000565574.5:0 uc059wxz.1:0 uc059wya.1:0 uc059wyb.1:0 uc059wyc.1:0 uc059wyd.1:0 uc059wye.1:0 uc059wyf.1:0 uc059wyg.1:0 uc002fbt.7:0 AK314700:0 BC107587:0 BC058031:0 BC070299:0 AK055872:0 BC017862:0 K01763:0 L29394:0 BC121124:0 BC121125:0 ENST00000568417.6:2 uc059wyh.1:2 X00637:3 K00422:5 ENST00000228226.12:-11 ENST00000398131.6:-11 uc059wxx.1:-11 uc059wxy.1:-11 ENST00000355906.9:-25 uc002fbr.5:-25 ENST00000570083.5:-28 NM_001126102:-28 NM_001318138:-28 NM_005143:-28 uc010cgm.4:-28 |
TATA-Box annotation
| Distance to TSS: | 36 |
|---|---|
| Nearest PromoterID: | NM_001126102 |
| Entrez ID: | 3240 |
| Nearest Unigene: | Hs.513711 |
| Nearest Refseq: | NM_005143 |
| Nearest Ensembl: | ENSG00000257017 |
| Gene Name: | HP |
| Gene Alias: | BP|HP2ALPHA2|HPA1S |
| Gene Description: | haptoglobin |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.492537 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -37(CAGCATAAAAAG,-,0.00),-35(GCATAAAAAGAC,+,0.00) |
