Difference between revisions of "TSS:Hg 236758.1"
From referenceTSS
| Line 2: | Line 2: | ||
|C17orf88= | |C17orf88= | ||
|LINC00530= | |LINC00530= | ||
| − | |all_trans= | + | |all_trans=AK313001:28 AK294652:46 AY358509:309 BC047456:-310 ENST00000571371.5:312 ENST00000573294.1:312 CR749607:312 ENST00000451037.7:-339 NM_020178:-339 BC068462:-352 CR936674:-390 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance= | + | |distance=28 |
|distance_to_tss=119 | |distance_to_tss=119 | ||
|end=43917327 | |end=43917327 | ||
| Line 11: | Line 11: | ||
|entrez_id=23591 | |entrez_id=23591 | ||
|gc_percent=0.58209 | |gc_percent=0.58209 | ||
| − | |gene_alias=APR-2 | + | |gene_alias=APR-2{{!}}C17orf88{{!}}LINC00530 |
| − | |gene_description=family with sequence similarity 215 member A | + | |gene_description=family with sequence similarity 215 member A |
| − | |gene_name= | + | |gene_id=56934 |
| + | |gene_name=carbonic anhydrase 10 | ||
| + | |gene_source=HGNC:1369 | ||
| + | |gene_symbol=CA10 | ||
| + | |gene_synonyms=CA-RPX CARPX HUCEP-15 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:1369 | ||
|nearest_ensembl=ENSG00000267496 | |nearest_ensembl=ENSG00000267496 | ||
|nearest_promoter_id=NR_026770 | |nearest_promoter_id=NR_026770 | ||
|nearest_refseq=NR_026770 | |nearest_refseq=NR_026770 | ||
|nearest_unigene=Hs.721804 | |nearest_unigene=Hs.721804 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=43917326 | |start=43917326 | ||
|start_of_center_position=52158374 | |start_of_center_position=52158374 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=AK313001 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_236758.1 | |tss_id=hg_236758.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 14:04, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 52158374 |
|---|---|
| End of the center position in the TSS region: | 52158375 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK313001 |
|---|---|
| Distance: | 28 |
| Num_trans: | 11 |
| All_trans: | AK313001:28 AK294652:46 AY358509:309 BC047456:-310 ENST00000571371.5:312 ENST00000573294.1:312 CR749607:312 ENST00000451037.7:-339 NM_020178:-339 BC068462:-352 CR936674:-390 |
TATA-Box annotation
| Distance to TSS: | 119 |
|---|---|
| Nearest PromoterID: | NR_026770 |
| Entrez ID: | 23591 |
| Nearest Unigene: | Hs.721804 |
| Nearest Refseq: | NR_026770 |
| Nearest Ensembl: | ENSG00000267496 |
| Gene Name: | carbonic anhydrase 10 |
| Gene Alias: | APR-2|C17orf88|LINC00530 |
| Gene Description: | family with sequence similarity 215 member A |
| Gene Type: | ncRNA |
| CpG%: | 0.04 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
