Difference between revisions of "TSS:Hg 236837.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|PDKII= | |PDKII= | ||
| + | |all_trans=BC034782:5 ENST00000321535.5:-33 NM_153230:-33 | ||
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=5 |
|distance_to_tss=-4336 | |distance_to_tss=-4336 | ||
|end=50090404 | |end=50090404 | ||
| Line 9: | Line 10: | ||
|entrez_id=5164 | |entrez_id=5164 | ||
|gc_percent=0.557214 | |gc_percent=0.557214 | ||
| − | |gene_alias=PDHK2 | + | |gene_alias=PDHK2{{!}}PDKII |
|gene_description=pyruvate dehydrogenase kinase 2 | |gene_description=pyruvate dehydrogenase kinase 2 | ||
| − | |gene_name= | + | |gene_id=162517 |
| + | |gene_name=F-box protein 39 | ||
| + | |gene_source=HGNC:28565 | ||
| + | |gene_symbol=FBXO39 | ||
| + | |gene_synonyms=CT144 Fbx39 MGC35179 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:28565 | ||
|nearest_ensembl=ENSG00000005882 | |nearest_ensembl=ENSG00000005882 | ||
|nearest_promoter_id=NM_001199898 | |nearest_promoter_id=NM_001199898 | ||
|nearest_refseq=NM_002611 | |nearest_refseq=NM_002611 | ||
|nearest_unigene=Hs.256667 | |nearest_unigene=Hs.256667 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=50090398 | |start=50090398 | ||
|start_of_center_position=6776247 | |start_of_center_position=6776247 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=BC034782 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_236837.1 | |tss_id=hg_236837.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=Q8N4B4 | ||
}} | }} | ||
Revision as of 14:06, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 6776247 |
|---|---|
| End of the center position in the TSS region: | 6776248 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC034782 |
|---|---|
| Distance: | 5 |
| Num_trans: | 3 |
| All_trans: | BC034782:5 ENST00000321535.5:-33 NM_153230:-33 |
TATA-Box annotation
| Distance to TSS: | -4336 |
|---|---|
| Nearest PromoterID: | NM_001199898 |
| Entrez ID: | 5164 |
| Nearest Unigene: | Hs.256667 |
| Nearest Refseq: | NM_002611 |
| Nearest Ensembl: | ENSG00000005882 |
| Gene Name: | F-box protein 39 |
| Gene Alias: | PDHK2|PDKII |
| Gene Description: | pyruvate dehydrogenase kinase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.557214 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
