Difference between revisions of "TSS:Hg 236952.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000571868.1:98 ENST00000574093.1:112 ENST00000576919.1:-124 ENST00000650606.1:-147 NR_165247:-147 AK096111:-147 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| − | |distance= | + | |distance=98 |
| − | |distance_to_tss=- | + | |distance_to_tss=-79 |
|end=67044475 | |end=67044475 | ||
|end_of_center_position=81330527 | |end_of_center_position=81330527 | ||
| Line 11: | Line 11: | ||
|gene_alias=CACNLG | |gene_alias=CACNLG | ||
|gene_description=calcium voltage-gated channel auxiliary subunit gamma 1 | |gene_description=calcium voltage-gated channel auxiliary subunit gamma 1 | ||
| − | |gene_id= | + | |gene_id=284186 |
| − | |gene_name= | + | |gene_name=TMEM105 long non-coding RNA |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:26794 |
| − | |gene_symbol= | + | |gene_symbol=TMEM105 |
| − | |gene_synonyms= | + | |gene_synonyms=FLJ38792 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:26794 |
|nearest_ensembl=ENSG00000108878 | |nearest_ensembl=ENSG00000108878 | ||
|nearest_promoter_id=NM_000727 | |nearest_promoter_id=NM_000727 | ||
|nearest_refseq=NM_000727 | |nearest_refseq=NM_000727 | ||
|nearest_unigene=Hs.147989 | |nearest_unigene=Hs.147989 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=67044474 | |start=67044474 | ||
|start_of_center_position=81330526 | |start_of_center_position=81330526 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-43(GCATTAATAGCA,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000571868.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_236952.1 | |tss_id=hg_236952.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 14:08, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 81330526 |
|---|---|
| End of the center position in the TSS region: | 81330527 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000571868.1 |
|---|---|
| Distance: | 98 |
| Num_trans: | 6 |
| All_trans: | ENST00000571868.1:98 ENST00000574093.1:112 ENST00000576919.1:-124 ENST00000650606.1:-147 NR_165247:-147 AK096111:-147 |
TATA-Box annotation
| Distance to TSS: | -79 |
|---|---|
| Nearest PromoterID: | NM_000727 |
| Entrez ID: | 786 |
| Nearest Unigene: | Hs.147989 |
| Nearest Refseq: | NM_000727 |
| Nearest Ensembl: | ENSG00000108878 |
| Gene Name: | TMEM105 long non-coding RNA |
| Gene Alias: | CACNLG |
| Gene Description: | calcium voltage-gated channel auxiliary subunit gamma 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -43(GCATTAATAGCA,+,0.00) |
