Difference between revisions of "TSS:Hg 237076.1"
From referenceTSS
| Line 5: | Line 5: | ||
|DFNA26= | |DFNA26= | ||
|HEL-176= | |HEL-176= | ||
| + | |all_trans=ENST00000549468.5:-84 ENST00000400167.6:-84 NM_173211:-84 | ||
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=-84 |
| − | |distance_to_tss= | + | |distance_to_tss=2704 |
|end=81510098 | |end=81510098 | ||
|end_of_center_position=3453858 | |end_of_center_position=3453858 | ||
|entrez_id=71 | |entrez_id=71 | ||
|gc_percent=0.383085 | |gc_percent=0.383085 | ||
| − | |gene_alias=ACT | + | |gene_alias=ACT{{!}}ACTG{{!}}DFNA20{{!}}DFNA26{{!}}HEL-176 |
|gene_description=actin gamma 1 | |gene_description=actin gamma 1 | ||
| − | |gene_name= | + | |gene_id=7050 |
| + | |gene_name=TGFB induced factor homeobox 1 | ||
| + | |gene_source=HGNC:11776 | ||
| + | |gene_symbol=TGIF1 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11776 | ||
|nearest_ensembl=ENSG00000184009 | |nearest_ensembl=ENSG00000184009 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001199954 |
|nearest_refseq=NM_001614 | |nearest_refseq=NM_001614 | ||
|nearest_unigene=Hs.514581 | |nearest_unigene=Hs.514581 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=81510092 | |start=81510092 | ||
|start_of_center_position=3453857 | |start_of_center_position=3453857 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000549468.5 ENST00000400167.6 NM_173211 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_237076.1 | |tss_id=hg_237076.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=F8VX54 Q15583 | ||
}} | }} | ||
Revision as of 14:11, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3453857 |
|---|---|
| End of the center position in the TSS region: | 3453858 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000549468.5 ENST00000400167.6 NM_173211 |
|---|---|
| Distance: | -84 |
| Num_trans: | 3 |
| All_trans: | ENST00000549468.5:-84 ENST00000400167.6:-84 NM_173211:-84 |
TATA-Box annotation
| Distance to TSS: | 2704 |
|---|---|
| Nearest PromoterID: | NM_001199954 |
| Entrez ID: | 71 |
| Nearest Unigene: | Hs.514581 |
| Nearest Refseq: | NM_001614 |
| Nearest Ensembl: | ENSG00000184009 |
| Gene Name: | TGFB induced factor homeobox 1 |
| Gene Alias: | ACT|ACTG|DFNA20|DFNA26|HEL-176 |
| Gene Description: | actin gamma 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.383085 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
