Difference between revisions of "TSS:Hg 237332.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000595684.5:-11 ENST00000332386.9:-11 ENST00000335393.8:-11 NM_001098524:-11 NM_173544:-11 AY254197:-11 AY254198:-11 AY254199:-11 BC167806:127 | ||
|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| − | |distance= | + | |distance=-11 |
| − | |distance_to_tss=- | + | |distance_to_tss=-188676 |
|end=8914026 | |end=8914026 | ||
|end_of_center_position=17523312 | |end_of_center_position=17523312 | ||
|entrez_id=4729 | |entrez_id=4729 | ||
|gc_percent=0.497512 | |gc_percent=0.497512 | ||
| − | |gene_alias=CI-24k | + | |gene_alias=CI-24k{{!}}MC1DN7 |
|gene_description=NADH:ubiquinone oxidoreductase core subunit V2 | |gene_description=NADH:ubiquinone oxidoreductase core subunit V2 | ||
| − | |gene_name= | + | |gene_id=199786 |
| + | |gene_name=niban apoptosis regulator 3 | ||
| + | |gene_source=HGNC:24130 | ||
| + | |gene_symbol=NIBAN3 | ||
| + | |gene_synonyms=BCNP1 FLJ39802 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:24130 | ||
|nearest_ensembl=ENSG00000178127 | |nearest_ensembl=ENSG00000178127 | ||
|nearest_promoter_id=NM_021074 | |nearest_promoter_id=NM_021074 | ||
|nearest_refseq=NM_021074 | |nearest_refseq=NM_021074 | ||
|nearest_unigene=Hs.464572 | |nearest_unigene=Hs.464572 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=8914019 | |start=8914019 | ||
|start_of_center_position=17523311 | |start_of_center_position=17523311 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=42(TCCCTTTTAAGG,-,0.00),43(CCCTTTTAAGGG,-,0.00),44(CCTTTTAAGGGC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000595684.5 ENST00000332386.9 ENST00000335393.8 NM_001098524 NM_173544 AY254197 AY254198 AY254199 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_237332.1 | |tss_id=hg_237332.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=Q86XR2 | ||
}} | }} | ||
Revision as of 14:17, 17 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 17523311 |
|---|---|
| End of the center position in the TSS region: | 17523312 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000595684.5 ENST00000332386.9 ENST00000335393.8 NM_001098524 NM_173544 AY254197 AY254198 AY254199 |
|---|---|
| Distance: | -11 |
| Num_trans: | 9 |
| All_trans: | ENST00000595684.5:-11 ENST00000332386.9:-11 ENST00000335393.8:-11 NM_001098524:-11 NM_173544:-11 AY254197:-11 AY254198:-11 AY254199:-11 BC167806:127 |
TATA-Box annotation
| Distance to TSS: | -188676 |
|---|---|
| Nearest PromoterID: | NM_021074 |
| Entrez ID: | 4729 |
| Nearest Unigene: | Hs.464572 |
| Nearest Refseq: | NM_021074 |
| Nearest Ensembl: | ENSG00000178127 |
| Gene Name: | niban apoptosis regulator 3 |
| Gene Alias: | CI-24k|MC1DN7 |
| Gene Description: | NADH:ubiquinone oxidoreductase core subunit V2 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.497512 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 42(TCCCTTTTAAGG,-,0.00),43(CCCTTTTAAGGG,-,0.00),44(CCTTTTAAGGGC,+,0.00) |
