Difference between revisions of "TSS:Hg 237597.1"
From referenceTSS
| Line 2: | Line 2: | ||
|CLIPR59= | |CLIPR59= | ||
|RSNL1= | |RSNL1= | ||
| − | |all_trans= | + | |all_trans=ENST00000588301.5:-76 NM_004597:-76 NM_177542:248 ENST00000342669.8:287 NM_001369752:287 NM_001369751:287 ENST00000391932.7:299 ENST00000587367.5:300 AK291912:318 U15008:322 ENST00000585392.2:323 ENST00000590212.1:323 BC000486:326 ENST00000587579.1:-329 ENST00000588599.5:469 |
|chr=chr19 | |chr=chr19 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| − | |distance=- | + | |distance=-76 |
| − | |distance_to_tss= | + | |distance_to_tss=68 |
|end=36032567 | |end=36032567 | ||
|end_of_center_position=45692240 | |end_of_center_position=45692240 | ||
|entrez_id=25999 | |entrez_id=25999 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
| − | |gene_alias=CLIPR-59 | + | |gene_alias=CLIPR-59{{!}}CLIPR59{{!}}RSNL1 |
|gene_description=CAP-Gly domain containing linker protein 3 | |gene_description=CAP-Gly domain containing linker protein 3 | ||
| − | |gene_id= | + | |gene_id=6633 |
| − | |gene_name= | + | |gene_name=small nuclear ribonucleoprotein D2 polypeptide |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:11159 |
| − | |gene_symbol= | + | |gene_symbol=SNRPD2 |
| − | |gene_synonyms= | + | |gene_synonyms=Sm-D2 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:11159 |
|nearest_ensembl=ENSG00000105270 | |nearest_ensembl=ENSG00000105270 | ||
|nearest_promoter_id=NM_001199570 | |nearest_promoter_id=NM_001199570 | ||
|nearest_refseq=NM_015526 | |nearest_refseq=NM_015526 | ||
|nearest_unigene=Hs.466539 | |nearest_unigene=Hs.466539 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=human | |species=human | ||
|start=36032566 | |start=36032566 | ||
|start_of_center_position=45692239 | |start_of_center_position=45692239 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000588301.5 NM_004597 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_237597.1 | |tss_id=hg_237597.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=P62316 |
}} | }} | ||
Revision as of 14:23, 17 June 2021
Basic information about the TSS
|
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| Start of the center position in the TSS region: | 45692239 |
|---|---|
| End of the center position in the TSS region: | 45692240 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000588301.5 NM_004597 |
|---|---|
| Distance: | -76 |
| Num_trans: | 15 |
| All_trans: | ENST00000588301.5:-76 NM_004597:-76 NM_177542:248 ENST00000342669.8:287 NM_001369752:287 NM_001369751:287 ENST00000391932.7:299 ENST00000587367.5:300 AK291912:318 U15008:322 ENST00000585392.2:323 ENST00000590212.1:323 BC000486:326 ENST00000587579.1:-329 ENST00000588599.5:469 |
TATA-Box annotation
| Distance to TSS: | 68 |
|---|---|
| Nearest PromoterID: | NM_001199570 |
| Entrez ID: | 25999 |
| Nearest Unigene: | Hs.466539 |
| Nearest Refseq: | NM_015526 |
| Nearest Ensembl: | ENSG00000105270 |
| Gene Name: | small nuclear ribonucleoprotein D2 polypeptide |
| Gene Alias: | CLIPR-59|CLIPR59|RSNL1 |
| Gene Description: | CAP-Gly domain containing linker protein 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
