Difference between revisions of "TSS:Hg 240485.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000514000.5:-62 AF193052:-74 BC012125:-99 ENST00000356736.5:-107 ENST00000512657.5:-107 NM_001135146:-107 NM_001135147:122 ENST00000424970.6:170 AK304274:170 NM_022154:184 ENST00000394833.6:236 AB040120:236 | ||
|chr=chr3 | |chr=chr3 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=-62 |
|distance_to_tss=27824 | |distance_to_tss=27824 | ||
|end=195624341 | |end=195624341 | ||
| Line 10: | Line 11: | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=uncharacterized LOC105374297 | |gene_description=uncharacterized LOC105374297 | ||
| − | |gene_name= | + | |gene_id=64116 |
| + | |gene_name=solute carrier family 39 member 8 | ||
| + | |gene_source=HGNC:20862 | ||
| + | |gene_symbol=SLC39A8 | ||
| + | |gene_synonyms=BIGM103 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:20862 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_136185 |
|nearest_refseq=NR_136185 | |nearest_refseq=NR_136185 | ||
|nearest_unigene=Hs.655175 | |nearest_unigene=Hs.655175 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=195624328 | |start=195624328 | ||
|start_of_center_position=102345374 | |start_of_center_position=102345374 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000514000.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_240485.1 | |tss_id=hg_240485.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 15:30, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 102345374 |
|---|---|
| End of the center position in the TSS region: | 102345375 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000514000.5 |
|---|---|
| Distance: | -62 |
| Num_trans: | 12 |
| All_trans: | ENST00000514000.5:-62 AF193052:-74 BC012125:-99 ENST00000356736.5:-107 ENST00000512657.5:-107 NM_001135146:-107 NM_001135147:122 ENST00000424970.6:170 AK304274:170 NM_022154:184 ENST00000394833.6:236 AB040120:236 |
TATA-Box annotation
| Distance to TSS: | 27824 |
|---|---|
| Nearest PromoterID: | NR_136185 |
| Entrez ID: | 105374297 |
| Nearest Unigene: | Hs.655175 |
| Nearest Refseq: | NR_136185 |
| Nearest Ensembl: | |
| Gene Name: | solute carrier family 39 member 8 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC105374297 |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
