Difference between revisions of "TSS:Hg 240767.1"
From referenceTSS
| Line 4: | Line 4: | ||
|PP3105= | |PP3105= | ||
|ZIP8= | |ZIP8= | ||
| − | |all_trans= | + | |all_trans=ENST00000623565.3:46 NR_126517:46 NR_126518:46 D82070:46 BC117444:92 BC117446:92 HQ258562:221 KJ892934:221 ENST00000505296.1:280 |
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| − | |distance= | + | |distance=46 |
| − | |distance_to_tss= | + | |distance_to_tss=107 |
|end=102345375 | |end=102345375 | ||
|end_of_center_position=5525110 | |end_of_center_position=5525110 | ||
|entrez_id=64116 | |entrez_id=64116 | ||
|gc_percent=0.552239 | |gc_percent=0.552239 | ||
| − | |gene_alias=BIGM103 | + | |gene_alias=BIGM103{{!}}CDG2N{{!}}LZT-Hs6{{!}}PP3105{{!}}ZIP8 |
|gene_description=solute carrier family 39 member 8 | |gene_description=solute carrier family 39 member 8 | ||
| − | |gene_id= | + | |gene_id=10141 |
| − | |gene_name= | + | |gene_name=long intergenic non-protein coding RNA 1587 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:13716 |
| − | |gene_symbol= | + | |gene_symbol=LINC01587 |
| − | |gene_synonyms= | + | |gene_synonyms=aC1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:13716 |
|nearest_ensembl=ENSG00000138821 | |nearest_ensembl=ENSG00000138821 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001135146 |
|nearest_refseq=NM_022154 | |nearest_refseq=NM_022154 | ||
|nearest_unigene=Hs.288034 | |nearest_unigene=Hs.288034 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=102345374 | |start=102345374 | ||
|start_of_center_position=5525109 | |start_of_center_position=5525109 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000623565.3 NR_126517 NR_126518 D82070 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_240767.1 | |tss_id=hg_240767.1 | ||
Revision as of 15:36, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 5525109 |
|---|---|
| End of the center position in the TSS region: | 5525110 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000623565.3 NR_126517 NR_126518 D82070 |
|---|---|
| Distance: | 46 |
| Num_trans: | 9 |
| All_trans: | ENST00000623565.3:46 NR_126517:46 NR_126518:46 D82070:46 BC117444:92 BC117446:92 HQ258562:221 KJ892934:221 ENST00000505296.1:280 |
TATA-Box annotation
| Distance to TSS: | 107 |
|---|---|
| Nearest PromoterID: | NM_001135146 |
| Entrez ID: | 64116 |
| Nearest Unigene: | Hs.288034 |
| Nearest Refseq: | NM_022154 |
| Nearest Ensembl: | ENSG00000138821 |
| Gene Name: | long intergenic non-protein coding RNA 1587 |
| Gene Alias: | BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 |
| Gene Description: | solute carrier family 39 member 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
