Difference between revisions of "TSS:Hg 242697.1"
From referenceTSS
| Line 2: | Line 2: | ||
|TRAFIP20= | |TRAFIP20= | ||
|ZIMP7= | |ZIMP7= | ||
| − | |all_trans= | + | |all_trans=ENST00000526832.5:-83 BC063590:-83 BC036905:126 |
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance=- | + | |distance=-83 |
|distance_to_tss=-40952 | |distance_to_tss=-40952 | ||
|end=44707614 | |end=44707614 | ||
| Line 11: | Line 11: | ||
|entrez_id=83637 | |entrez_id=83637 | ||
|gc_percent=0.547264 | |gc_percent=0.547264 | ||
| − | |gene_alias=NET27 | + | |gene_alias=NET27{{!}}TRAFIP20{{!}}ZIMP7{{!}}hZIMP7 |
|gene_description=zinc finger MIZ-type containing 2 | |gene_description=zinc finger MIZ-type containing 2 | ||
| − | |gene_name= | + | |gene_id=23513 |
| + | |gene_name=scribble planar cell polarity protein | ||
| + | |gene_source=HGNC:30377 | ||
| + | |gene_symbol=SCRIB | ||
| + | |gene_synonyms=KIAA0147 SCRB1 Vartul | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hZIMP7= | |hZIMP7= | ||
| + | |hgnc_mgi_id=HGNC:30377 | ||
|nearest_ensembl=ENSG00000122515 | |nearest_ensembl=ENSG00000122515 | ||
|nearest_promoter_id=NM_001300959 | |nearest_promoter_id=NM_001300959 | ||
|nearest_refseq=NM_031449 | |nearest_refseq=NM_031449 | ||
|nearest_unigene=Hs.77978 | |nearest_unigene=Hs.77978 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=44707613 | |start=44707613 | ||
|start_of_center_position=143804067 | |start_of_center_position=143804067 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000526832.5 BC063590 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_242697.1 | |tss_id=hg_242697.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=H0YCG0 | ||
}} | }} | ||
Revision as of 16:21, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 143804067 |
|---|---|
| End of the center position in the TSS region: | 143804068 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000526832.5 BC063590 |
|---|---|
| Distance: | -83 |
| Num_trans: | 3 |
| All_trans: | ENST00000526832.5:-83 BC063590:-83 BC036905:126 |
TATA-Box annotation
| Distance to TSS: | -40952 |
|---|---|
| Nearest PromoterID: | NM_001300959 |
| Entrez ID: | 83637 |
| Nearest Unigene: | Hs.77978 |
| Nearest Refseq: | NM_031449 |
| Nearest Ensembl: | ENSG00000122515 |
| Gene Name: | scribble planar cell polarity protein |
| Gene Alias: | NET27|TRAFIP20|ZIMP7|hZIMP7 |
| Gene Description: | zinc finger MIZ-type containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.547264 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
