Difference between revisions of "TSS:Hg 242714.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=BC000047:-5 ENST00000526668.5:-48 LP997127:-80 LY480927:-80 LY495824:-80 LY496511:-80 LY497149:-80 LY499157:-80 LY500367:-80 LZ238771:-80 MP073629:-80 MP080402:-80 MS868989:-80 MS880472:-80 MS884336:-80 MS885486:-80 MS994519:-80 MA822648:-80 LY616535:-80 MB473037:-80 LP951752:-80 LQ724883:-80 LY480804:-80 LY495674:-80 LY496301:-80 LY496956:-80 LY498887:-80 LY500359:-80 LZ238512:-80 MS868839:-80 MS880202:-80 MS884143:-80 MS885478:-80 MS994309:-80 MA822312:-80 LY616276:-80 MB472806:-80 ENST00000531975.5:-146 ENST00000528296.5:-214 BT007379:-218 CR457046:-218 CU674022:-219 DQ893309:-220 EU176553:-220 AB590228:-223 ENST00000529920.5:-232 BC007935:-232 BC030151:-232 ENST00000533397.5:-242 BC012197:-433 BC013104:-467 BC000077:-470 ENST00000532702.1:-473 ENST00000394920.6:-478 ENST00000529163.5:-479 ENST00000528957.6:-479 NM_001317782:-479 NM_000973:-479 NM_001317771:-479 NM_033301:-479 AK301073:-479 D28421:-479 AK289459:-485 | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=-5 |
| − | |distance_to_tss= | + | |distance_to_tss=2880 |
|end=47976741 | |end=47976741 | ||
|end_of_center_position=144791910 | |end_of_center_position=144791910 | ||
| Line 10: | Line 11: | ||
|gene_alias=hHUS1 | |gene_alias=hHUS1 | ||
|gene_description=HUS1 checkpoint clamp component | |gene_description=HUS1 checkpoint clamp component | ||
| − | |gene_name= | + | |gene_id=6132 |
| + | |gene_name=ribosomal protein L8 | ||
| + | |gene_source=HGNC:10368 | ||
| + | |gene_symbol=RPL8 | ||
| + | |gene_synonyms=L8 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:10368 | ||
|nearest_ensembl=ENSG00000136273 | |nearest_ensembl=ENSG00000136273 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_037917 |
|nearest_refseq=NM_004507 | |nearest_refseq=NM_004507 | ||
|nearest_unigene=Hs.152983 | |nearest_unigene=Hs.152983 | ||
| − | |num_trans= | + | |num_trans=63 |
|species=human | |species=human | ||
|start=47976729 | |start=47976729 | ||
|start_of_center_position=144791909 | |start_of_center_position=144791909 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=BC000047 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_242714.1 | |tss_id=hg_242714.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 16:22, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 144791909 |
|---|---|
| End of the center position in the TSS region: | 144791910 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC000047 |
|---|---|
| Distance: | -5 |
| Num_trans: | 63 |
| All_trans: | BC000047:-5 ENST00000526668.5:-48 LP997127:-80 LY480927:-80 LY495824:-80 LY496511:-80 LY497149:-80 LY499157:-80 LY500367:-80 LZ238771:-80 MP073629:-80 MP080402:-80 MS868989:-80 MS880472:-80 MS884336:-80 MS885486:-80 MS994519:-80 MA822648:-80 LY616535:-80 MB473037:-80 LP951752:-80 LQ724883:-80 LY480804:-80 LY495674:-80 LY496301:-80 LY496956:-80 LY498887:-80 LY500359:-80 LZ238512:-80 MS868839:-80 MS880202:-80 MS884143:-80 MS885478:-80 MS994309:-80 MA822312:-80 LY616276:-80 MB472806:-80 ENST00000531975.5:-146 ENST00000528296.5:-214 BT007379:-218 CR457046:-218 CU674022:-219 DQ893309:-220 EU176553:-220 AB590228:-223 ENST00000529920.5:-232 BC007935:-232 BC030151:-232 ENST00000533397.5:-242 BC012197:-433 BC013104:-467 BC000077:-470 ENST00000532702.1:-473 ENST00000394920.6:-478 ENST00000529163.5:-479 ENST00000528957.6:-479 NM_001317782:-479 NM_000973:-479 NM_001317771:-479 NM_033301:-479 AK301073:-479 D28421:-479 AK289459:-485 |
TATA-Box annotation
| Distance to TSS: | 2880 |
|---|---|
| Nearest PromoterID: | NR_037917 |
| Entrez ID: | 3364 |
| Nearest Unigene: | Hs.152983 |
| Nearest Refseq: | NM_004507 |
| Nearest Ensembl: | ENSG00000136273 |
| Gene Name: | ribosomal protein L8 |
| Gene Alias: | hHUS1 |
| Gene Description: | HUS1 checkpoint clamp component |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.432836 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
