Difference between revisions of "TSS:Hg 242720.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000262096.13:35 NM_016353:35 BC039253:75 HM005679:75 AB023584:-120 KJ904748:277 BC050272:-418 | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| − | |distance= | + | |distance=35 |
|distance_to_tss=-16002 | |distance_to_tss=-16002 | ||
|end=5160548 | |end=5160548 | ||
| Line 9: | Line 10: | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=zinc finger protein 890, pseudogene |
| − | |gene_name= | + | |gene_id=51201 |
| + | |gene_name=zinc finger DHHC-type palmitoyltransferase 2 | ||
| + | |gene_source=HGNC:18469 | ||
| + | |gene_symbol=ZDHHC2 | ||
| + | |gene_synonyms=DHHC2 ZNF372 | ||
|gene_type=pseudo | |gene_type=pseudo | ||
| + | |hgnc_mgi_id=HGNC:18469 | ||
|nearest_ensembl=ENSG00000159904 | |nearest_ensembl=ENSG00000159904 | ||
|nearest_promoter_id=NR_034163 | |nearest_promoter_id=NR_034163 | ||
|nearest_refseq=NR_034163 | |nearest_refseq=NR_034163 | ||
|nearest_unigene=Hs.690815 | |nearest_unigene=Hs.690815 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=5160547 | |start=5160547 | ||
|start_of_center_position=17156446 | |start_of_center_position=17156446 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000262096.13 NM_016353 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_242720.1 | |tss_id=hg_242720.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=A0A140VKD9 Q9UIJ5 | ||
}} | }} | ||
Revision as of 16:22, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 17156446 |
|---|---|
| End of the center position in the TSS region: | 17156447 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000262096.13 NM_016353 |
|---|---|
| Distance: | 35 |
| Num_trans: | 7 |
| All_trans: | ENST00000262096.13:35 NM_016353:35 BC039253:75 HM005679:75 AB023584:-120 KJ904748:277 BC050272:-418 |
TATA-Box annotation
| Distance to TSS: | -16002 |
|---|---|
| Nearest PromoterID: | NR_034163 |
| Entrez ID: | 645700 |
| Nearest Unigene: | Hs.690815 |
| Nearest Refseq: | NR_034163 |
| Nearest Ensembl: | ENSG00000159904 |
| Gene Name: | zinc finger DHHC-type palmitoyltransferase 2 |
| Gene Alias: | - |
| Gene Description: | zinc finger protein 890, pseudogene |
| Gene Type: | pseudo |
| CpG%: | 0.045 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
