Difference between revisions of "TSS:Hg 242843.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000518221.5:57 | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| − | |distance= | + | |distance=57 |
| − | |distance_to_tss= | + | |distance_to_tss=28 |
|end=90403493 | |end=90403493 | ||
|end_of_center_position=47960119 | |end_of_center_position=47960119 | ||
| Line 10: | Line 11: | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=claudin 12 | |gene_description=claudin 12 | ||
| − | |gene_name= | + | |gene_id=4173 |
| + | |gene_name=minichromosome maintenance complex component 4 | ||
| + | |gene_source=HGNC:6947 | ||
| + | |gene_symbol=MCM4 | ||
| + | |gene_synonyms=CDC54 MGC33310 P1-Cdc21 hCdc21 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:6947 | ||
|nearest_ensembl=ENSG00000157224 | |nearest_ensembl=ENSG00000157224 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001185073 |
|nearest_refseq=NM_012129 | |nearest_refseq=NM_012129 | ||
|nearest_unigene=Hs.731917 | |nearest_unigene=Hs.731917 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=90403484 | |start=90403484 | ||
|start_of_center_position=47960118 | |start_of_center_position=47960118 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000518221.5 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_242843.1 | |tss_id=hg_242843.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=E5RFR3 | ||
}} | }} | ||
Revision as of 16:25, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 47960118 |
|---|---|
| End of the center position in the TSS region: | 47960119 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000518221.5 |
|---|---|
| Distance: | 57 |
| Num_trans: | 1 |
| All_trans: | ENST00000518221.5:57 |
TATA-Box annotation
| Distance to TSS: | 28 |
|---|---|
| Nearest PromoterID: | NM_001185073 |
| Entrez ID: | 9069 |
| Nearest Unigene: | Hs.731917 |
| Nearest Refseq: | NM_012129 |
| Nearest Ensembl: | ENSG00000157224 |
| Gene Name: | minichromosome maintenance complex component 4 |
| Gene Alias: | - |
| Gene Description: | claudin 12 |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.587065 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
