Difference between revisions of "TSS:Hg 243034.1"
From referenceTSS
| Line 11: | Line 11: | ||
|PLEC1b= | |PLEC1b= | ||
|PLTN= | |PLTN= | ||
| + | |all_trans=ENST00000412145.5:-125 ENST00000446349.5:-125 NM_001145370:-125 NM_001145369:-125 BX648253:-125 | ||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| − | |distance= | + | |distance=-125 |
|distance_to_tss=21 | |distance_to_tss=21 | ||
|end=143973515 | |end=143973515 | ||
| Line 19: | Line 20: | ||
|entrez_id=5339 | |entrez_id=5339 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
| − | |gene_alias=EBS1 | + | |gene_alias=EBS1{{!}}EBSMD{{!}}EBSND{{!}}EBSO{{!}}EBSOG{{!}}EBSPA{{!}}HD1{{!}}LGMD2Q{{!}}LGMDR17{{!}}PCN{{!}}PLEC1{{!}}PLEC1b{{!}}PLTN |
|gene_description=plectin | |gene_description=plectin | ||
| − | |gene_name= | + | |gene_id=5774 |
| + | |gene_name=protein tyrosine phosphatase non-receptor type 3 | ||
| + | |gene_source=HGNC:9655 | ||
| + | |gene_symbol=PTPN3 | ||
| + | |gene_synonyms=PTPH1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:9655 | ||
|nearest_ensembl=ENSG00000178209 | |nearest_ensembl=ENSG00000178209 | ||
|nearest_promoter_id=NM_201378 | |nearest_promoter_id=NM_201378 | ||
|nearest_refseq=NM_000445 | |nearest_refseq=NM_000445 | ||
|nearest_unigene=Hs.434248 | |nearest_unigene=Hs.434248 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=143973500 | |start=143973500 | ||
|start_of_center_position=109451258 | |start_of_center_position=109451258 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=43(GCTTAAAGAGGC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000412145.5 ENST00000446349.5 NM_001145370 NM_001145369 BX648253 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243034.1 | |tss_id=hg_243034.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=P26045 | ||
}} | }} | ||
Revision as of 16:29, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 109451258 |
|---|---|
| End of the center position in the TSS region: | 109451259 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000412145.5 ENST00000446349.5 NM_001145370 NM_001145369 BX648253 |
|---|---|
| Distance: | -125 |
| Num_trans: | 5 |
| All_trans: | ENST00000412145.5:-125 ENST00000446349.5:-125 NM_001145370:-125 NM_001145369:-125 BX648253:-125 |
TATA-Box annotation
| Distance to TSS: | 21 |
|---|---|
| Nearest PromoterID: | NM_201378 |
| Entrez ID: | 5339 |
| Nearest Unigene: | Hs.434248 |
| Nearest Refseq: | NM_000445 |
| Nearest Ensembl: | ENSG00000178209 |
| Gene Name: | protein tyrosine phosphatase non-receptor type 3 |
| Gene Alias: | EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN |
| Gene Description: | plectin |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 43(GCTTAAAGAGGC,+,0.00) |
