Difference between revisions of "TSS:Hg 243059.1"
From referenceTSS
| Line 4: | Line 4: | ||
|MP44= | |MP44= | ||
|MTSG1= | |MTSG1= | ||
| − | |all_trans= | + | |all_trans=ENST00000603230.1:10 AK310791:10 ENST00000265132.8:38 NM_001633:38 AK290837:38 X04225:57 AK310776:-58 AY544123:69 X04494:84 BC041593:-94 AB463406:126 HQ448440:128 KJ890666:128 CU692002:128 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| − | |distance= | + | |distance=10 |
|distance_to_tss=41 | |distance_to_tss=41 | ||
|end=17800876 | |end=17800876 | ||
| Line 13: | Line 13: | ||
|entrez_id=57509 | |entrez_id=57509 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
| − | |gene_alias=ATBP | + | |gene_alias=ATBP{{!}}ATIP{{!}}ATIP3{{!}}ICIS{{!}}MP44{{!}}MTSG1 |
| − | |gene_description=microtubule associated | + | |gene_description=microtubule associated scaffold protein 1 |
| − | |gene_id= | + | |gene_id=259 |
| − | |gene_name= | + | |gene_name=alpha-1-microglobulin/bikunin precursor |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:453 |
| − | |gene_symbol= | + | |gene_symbol=AMBP |
| − | |gene_synonyms= | + | |gene_synonyms=EDC1 HCP HI30 IATIL ITILC UTI |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:453 |
|nearest_ensembl=ENSG00000129422 | |nearest_ensembl=ENSG00000129422 | ||
|nearest_promoter_id=NM_001001925 | |nearest_promoter_id=NM_001001925 | ||
| Line 31: | Line 31: | ||
|start_of_center_position=114078339 | |start_of_center_position=114078339 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000603230.1 AK310791 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243059.1 | |tss_id=hg_243059.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=S4R3Y4 |
}} | }} | ||
Revision as of 16:30, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 114078339 |
|---|---|
| End of the center position in the TSS region: | 114078340 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000603230.1 AK310791 |
|---|---|
| Distance: | 10 |
| Num_trans: | 14 |
| All_trans: | ENST00000603230.1:10 AK310791:10 ENST00000265132.8:38 NM_001633:38 AK290837:38 X04225:57 AK310776:-58 AY544123:69 X04494:84 BC041593:-94 AB463406:126 HQ448440:128 KJ890666:128 CU692002:128 |
TATA-Box annotation
| Distance to TSS: | 41 |
|---|---|
| Nearest PromoterID: | NM_001001925 |
| Entrez ID: | 57509 |
| Nearest Unigene: | Hs.7946 |
| Nearest Refseq: | NM_020749 |
| Nearest Ensembl: | ENSG00000129422 |
| Gene Name: | alpha-1-microglobulin/bikunin precursor |
| Gene Alias: | ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 |
| Gene Description: | microtubule associated scaffold protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
