Difference between revisions of "TSS:Hg 243068.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|RET/PCM-1= | |RET/PCM-1= | ||
| − | |all_trans= | + | |all_trans=AY703043:46 AB384426:181 AB384655:181 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance= | + | |distance=46 |
| − | |distance_to_tss= | + | |distance_to_tss=49369 |
|end=17972357 | |end=17972357 | ||
|end_of_center_position=114381514 | |end_of_center_position=114381514 | ||
|entrez_id=5108 | |entrez_id=5108 | ||
|gc_percent=0.328358 | |gc_percent=0.328358 | ||
| − | |gene_alias=PTC4 | + | |gene_alias=PTC4{{!}}RET/PCM-1 |
|gene_description=pericentriolar material 1 | |gene_description=pericentriolar material 1 | ||
| − | |gene_id= | + | |gene_id=80709 |
| − | |gene_name= | + | |gene_name=AT-hook transcription factor |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:24108 |
| − | |gene_symbol= | + | |gene_symbol=AKNA |
| − | |gene_synonyms= | + | |gene_synonyms=KIAA1968 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:24108 |
|nearest_ensembl=ENSG00000078674 | |nearest_ensembl=ENSG00000078674 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001352656 |
|nearest_refseq=NM_006197 | |nearest_refseq=NM_006197 | ||
|nearest_unigene=Hs.491148 | |nearest_unigene=Hs.491148 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=17972356 | |start=17972356 | ||
|start_of_center_position=114381513 | |start_of_center_position=114381513 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=AY703043 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_243068.1 | |tss_id=hg_243068.1 | ||
Revision as of 16:30, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 114381513 |
|---|---|
| End of the center position in the TSS region: | 114381514 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AY703043 |
|---|---|
| Distance: | 46 |
| Num_trans: | 3 |
| All_trans: | AY703043:46 AB384426:181 AB384655:181 |
TATA-Box annotation
| Distance to TSS: | 49369 |
|---|---|
| Nearest PromoterID: | NM_001352656 |
| Entrez ID: | 5108 |
| Nearest Unigene: | Hs.491148 |
| Nearest Refseq: | NM_006197 |
| Nearest Ensembl: | ENSG00000078674 |
| Gene Name: | AT-hook transcription factor |
| Gene Alias: | PTC4|RET/PCM-1 |
| Gene Description: | pericentriolar material 1 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.328358 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
