Difference between revisions of "TSS:Hg 243070.1"
From referenceTSS
| Line 5: | Line 5: | ||
|PHP32= | |PHP32= | ||
|SMAPME= | |SMAPME= | ||
| + | |all_trans=NM_001083885:144 ENST00000265134.10:186 AL110228:186 | ||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| − | |distance= | + | |distance=144 |
| − | |distance_to_tss= | + | |distance_to_tss=55 |
|end=18084055 | |end=18084055 | ||
|end_of_center_position=114503359 | |end_of_center_position=114503359 | ||
|entrez_id=427 | |entrez_id=427 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
| − | |gene_alias=AC | + | |gene_alias=AC{{!}}ACDase{{!}}ASAH{{!}}PHP{{!}}PHP32{{!}}SMAPME |
|gene_description=N-acylsphingosine amidohydrolase 1 | |gene_description=N-acylsphingosine amidohydrolase 1 | ||
| − | |gene_name= | + | |gene_id=25861 |
| + | |gene_name=whirlin | ||
| + | |gene_source=HGNC:16361 | ||
| + | |gene_symbol=WHRN | ||
| + | |gene_synonyms=CIP98 PDZD7B USH2D | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:16361 | ||
|nearest_ensembl=ENSG00000104763 | |nearest_ensembl=ENSG00000104763 | ||
|nearest_promoter_id=NM_177924 | |nearest_promoter_id=NM_177924 | ||
|nearest_refseq=NM_004315 | |nearest_refseq=NM_004315 | ||
|nearest_unigene=Hs.527412 | |nearest_unigene=Hs.527412 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=18084048 | |start=18084048 | ||
|start_of_center_position=114503358 | |start_of_center_position=114503358 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_001083885 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243070.1 | |tss_id=hg_243070.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=Q9P202 | ||
}} | }} | ||
Revision as of 16:30, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 114503358 |
|---|---|
| End of the center position in the TSS region: | 114503359 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001083885 |
|---|---|
| Distance: | 144 |
| Num_trans: | 3 |
| All_trans: | NM_001083885:144 ENST00000265134.10:186 AL110228:186 |
TATA-Box annotation
| Distance to TSS: | 55 |
|---|---|
| Nearest PromoterID: | NM_177924 |
| Entrez ID: | 427 |
| Nearest Unigene: | Hs.527412 |
| Nearest Refseq: | NM_004315 |
| Nearest Ensembl: | ENSG00000104763 |
| Gene Name: | whirlin |
| Gene Alias: | AC|ACDase|ASAH|PHP|PHP32|SMAPME |
| Gene Description: | N-acylsphingosine amidohydrolase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
