Difference between revisions of "TSS:Hg 243083.1"
From referenceTSS
| Line 4: | Line 4: | ||
|SMDP2= | |SMDP2= | ||
|SP-C= | |SP-C= | ||
| + | |all_trans=ENST00000425647.1:-73 AK001729:-73 AK027636:-76 | ||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| − | |distance= | + | |distance=-73 |
| − | |distance_to_tss= | + | |distance_to_tss=918 |
|end=22162725 | |end=22162725 | ||
|end_of_center_position=120447999 | |end_of_center_position=120447999 | ||
|entrez_id=6440 | |entrez_id=6440 | ||
|gc_percent=0.587065 | |gc_percent=0.587065 | ||
| − | |gene_alias=BRICD6 | + | |gene_alias=BRICD6{{!}}PSP-C{{!}}SFTP2{{!}}SMDP2{{!}}SP-C |
|gene_description=surfactant protein C | |gene_description=surfactant protein C | ||
| − | |gene_name= | + | |gene_id=55755 |
| + | |gene_name=CDK5 regulatory subunit associated protein 2 | ||
| + | |gene_source=HGNC:18672 | ||
| + | |gene_symbol=CDK5RAP2 | ||
| + | |gene_synonyms=C48 CEP215 FLJ10867 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:18672 | ||
|nearest_ensembl=ENSG00000168484 | |nearest_ensembl=ENSG00000168484 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001172410 |
|nearest_refseq=NM_003018 | |nearest_refseq=NM_003018 | ||
|nearest_unigene=Hs.1074 | |nearest_unigene=Hs.1074 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=22162707 | |start=22162707 | ||
|start_of_center_position=120447998 | |start_of_center_position=120447998 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000425647.1 AK001729 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_243083.1 | |tss_id=hg_243083.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=Q5JTU8 | ||
}} | }} | ||
Revision as of 16:30, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 120447998 |
|---|---|
| End of the center position in the TSS region: | 120447999 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000425647.1 AK001729 |
|---|---|
| Distance: | -73 |
| Num_trans: | 3 |
| All_trans: | ENST00000425647.1:-73 AK001729:-73 AK027636:-76 |
TATA-Box annotation
| Distance to TSS: | 918 |
|---|---|
| Nearest PromoterID: | NM_001172410 |
| Entrez ID: | 6440 |
| Nearest Unigene: | Hs.1074 |
| Nearest Refseq: | NM_003018 |
| Nearest Ensembl: | ENSG00000168484 |
| Gene Name: | CDK5 regulatory subunit associated protein 2 |
| Gene Alias: | BRICD6|PSP-C|SFTP2|SMDP2|SP-C |
| Gene Description: | surfactant protein C |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.587065 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
