Difference between revisions of "TSS:Hg 243086.1"
From referenceTSS
| Line 4: | Line 4: | ||
|SMDP2= | |SMDP2= | ||
|SP-C= | |SP-C= | ||
| + | |all_trans=U19261:-11 BC024145:-14 BT019408:64 HQ447750:64 KJ897703:64 AB590501:64 CU692854:64 | ||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| − | |distance= | + | |distance=-11 |
| − | |distance_to_tss= | + | |distance_to_tss=1371 |
|end=22163174 | |end=22163174 | ||
|end_of_center_position=120926139 | |end_of_center_position=120926139 | ||
|entrez_id=6440 | |entrez_id=6440 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
| − | |gene_alias=BRICD6 | + | |gene_alias=BRICD6{{!}}PSP-C{{!}}SFTP2{{!}}SMDP2{{!}}SP-C |
|gene_description=surfactant protein C | |gene_description=surfactant protein C | ||
| − | |gene_name= | + | |gene_id=7185 |
| + | |gene_name=TNF receptor associated factor 1 | ||
| + | |gene_source=HGNC:12031 | ||
| + | |gene_symbol=TRAF1 | ||
| + | |gene_synonyms=EBI6 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:12031 | ||
|nearest_ensembl=ENSG00000168484 | |nearest_ensembl=ENSG00000168484 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001172410 |
|nearest_refseq=NM_003018 | |nearest_refseq=NM_003018 | ||
|nearest_unigene=Hs.1074 | |nearest_unigene=Hs.1074 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=22163163 | |start=22163163 | ||
|start_of_center_position=120926138 | |start_of_center_position=120926138 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=U19261 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_243086.1 | |tss_id=hg_243086.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 16:30, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 120926138 |
|---|---|
| End of the center position in the TSS region: | 120926139 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | U19261 |
|---|---|
| Distance: | -11 |
| Num_trans: | 7 |
| All_trans: | U19261:-11 BC024145:-14 BT019408:64 HQ447750:64 KJ897703:64 AB590501:64 CU692854:64 |
TATA-Box annotation
| Distance to TSS: | 1371 |
|---|---|
| Nearest PromoterID: | NM_001172410 |
| Entrez ID: | 6440 |
| Nearest Unigene: | Hs.1074 |
| Nearest Refseq: | NM_003018 |
| Nearest Ensembl: | ENSG00000168484 |
| Gene Name: | TNF receptor associated factor 1 |
| Gene Alias: | BRICD6|PSP-C|SFTP2|SMDP2|SP-C |
| Gene Description: | surfactant protein C |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
