Difference between revisions of "TSS:Hg 243098.1"
From referenceTSS
| Line 2: | Line 2: | ||
|SCAM1= | |SCAM1= | ||
|SH3D4= | |SH3D4= | ||
| + | |all_trans=AB307718:-103 HQ692856:-103 HQ709184:-103 EU446475:-104 AB463946:-104 JF432187:-105 KJ891201:-105 KR710870:-105 CU689402:-106 U76388:-118 | ||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance= | + | |distance=-103 |
| − | |distance_to_tss=- | + | |distance_to_tss=-29472 |
|end=22522455 | |end=22522455 | ||
|end_of_center_position=124503292 | |end_of_center_position=124503292 | ||
|entrez_id=10174 | |entrez_id=10174 | ||
|gc_percent=0.288557 | |gc_percent=0.288557 | ||
| − | |gene_alias=SCAM-1 | + | |gene_alias=SCAM-1{{!}}SCAM1{{!}}SH3D4 |
|gene_description=sorbin and SH3 domain containing 3 | |gene_description=sorbin and SH3 domain containing 3 | ||
| − | |gene_name= | + | |gene_id=2516 |
| + | |gene_name=nuclear receptor subfamily 5 group A member 1 | ||
| + | |gene_source=HGNC:7983 | ||
| + | |gene_symbol=NR5A1 | ||
| + | |gene_synonyms=AD4BP ELP FTZ1 SF-1 SF1 hSF-1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:7983 | ||
|nearest_ensembl=ENSG00000120896 | |nearest_ensembl=ENSG00000120896 | ||
|nearest_promoter_id=NM_005775 | |nearest_promoter_id=NM_005775 | ||
|nearest_refseq=NM_005775 | |nearest_refseq=NM_005775 | ||
|nearest_unigene=Hs.528572 | |nearest_unigene=Hs.528572 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=22522454 | |start=22522454 | ||
|start_of_center_position=124503291 | |start_of_center_position=124503291 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=AB307718 HQ692856 HQ709184 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_243098.1 | |tss_id=hg_243098.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=B6ZGU8 F1D8R8 | ||
}} | }} | ||
Revision as of 16:31, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 124503291 |
|---|---|
| End of the center position in the TSS region: | 124503292 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB307718 HQ692856 HQ709184 |
|---|---|
| Distance: | -103 |
| Num_trans: | 10 |
| All_trans: | AB307718:-103 HQ692856:-103 HQ709184:-103 EU446475:-104 AB463946:-104 JF432187:-105 KJ891201:-105 KR710870:-105 CU689402:-106 U76388:-118 |
TATA-Box annotation
| Distance to TSS: | -29472 |
|---|---|
| Nearest PromoterID: | NM_005775 |
| Entrez ID: | 10174 |
| Nearest Unigene: | Hs.528572 |
| Nearest Refseq: | NM_005775 |
| Nearest Ensembl: | ENSG00000120896 |
| Gene Name: | nuclear receptor subfamily 5 group A member 1 |
| Gene Alias: | SCAM-1|SCAM1|SH3D4 |
| Gene Description: | sorbin and SH3 domain containing 3 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.288557 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
