Difference between revisions of "TSS:Hg 243105.1"
From referenceTSS
| Line 3: | Line 3: | ||
|NKX3.1= | |NKX3.1= | ||
|NKX3A= | |NKX3A= | ||
| + | |all_trans=BC071915:-3 U12465:-4 ENST00000373570.8:5 ENST00000493018.5:-11 ENST00000487431.1:-12 BC000348:-21 AK291072:-31 ENST00000348462.6:-33 NM_007209:-33 BC010919:-33 D28448:-33 ENST00000629845.1:-37 ENST00000495728.1:-57 BC094828:364 CU674168:364 KJ893256:364 KJ898381:364 DQ891363:364 DQ894543:364 CR456877:364 | ||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance= | + | |distance=-3 |
|distance_to_tss=47279 | |distance_to_tss=47279 | ||
|end=23635615 | |end=23635615 | ||
| Line 11: | Line 12: | ||
|entrez_id=4824 | |entrez_id=4824 | ||
|gc_percent=0.517413 | |gc_percent=0.517413 | ||
| − | |gene_alias=BAPX2 | + | |gene_alias=BAPX2{{!}}NKX3{{!}}NKX3.1{{!}}NKX3A |
|gene_description=NK3 homeobox 1 | |gene_description=NK3 homeobox 1 | ||
| − | |gene_name= | + | |gene_id=11224 |
| + | |gene_name=ribosomal protein L35 | ||
| + | |gene_source=HGNC:10344 | ||
| + | |gene_symbol=RPL35 | ||
| + | |gene_synonyms=L35 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:10344 | ||
|nearest_ensembl=ENSG00000167034 | |nearest_ensembl=ENSG00000167034 | ||
|nearest_promoter_id=NM_001256339 | |nearest_promoter_id=NM_001256339 | ||
|nearest_refseq=NM_006167 | |nearest_refseq=NM_006167 | ||
|nearest_unigene=Hs.55999 | |nearest_unigene=Hs.55999 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=23635605 | |start=23635605 | ||
|start_of_center_position=124861921 | |start_of_center_position=124861921 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=BC071915 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_243105.1 | |tss_id=hg_243105.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 16:31, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 124861921 |
|---|---|
| End of the center position in the TSS region: | 124861922 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC071915 |
|---|---|
| Distance: | -3 |
| Num_trans: | 20 |
| All_trans: | BC071915:-3 U12465:-4 ENST00000373570.8:5 ENST00000493018.5:-11 ENST00000487431.1:-12 BC000348:-21 AK291072:-31 ENST00000348462.6:-33 NM_007209:-33 BC010919:-33 D28448:-33 ENST00000629845.1:-37 ENST00000495728.1:-57 BC094828:364 CU674168:364 KJ893256:364 KJ898381:364 DQ891363:364 DQ894543:364 CR456877:364 |
TATA-Box annotation
| Distance to TSS: | 47279 |
|---|---|
| Nearest PromoterID: | NM_001256339 |
| Entrez ID: | 4824 |
| Nearest Unigene: | Hs.55999 |
| Nearest Refseq: | NM_006167 |
| Nearest Ensembl: | ENSG00000167034 |
| Gene Name: | ribosomal protein L35 |
| Gene Alias: | BAPX2|NKX3|NKX3.1|NKX3A |
| Gene Description: | NK3 homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
