Difference between revisions of "TSS:Hg 243106.1"
From referenceTSS
| Line 3: | Line 3: | ||
|NKX3.1= | |NKX3.1= | ||
|NKX3A= | |NKX3A= | ||
| − | |all_trans= | + | |all_trans=ENST00000495728.1:7 ENST00000629845.1:27 ENST00000348462.6:31 NM_007209:31 BC010919:31 D28448:31 AK291072:33 BC000348:43 ENST00000487431.1:52 ENST00000493018.5:53 U12465:60 BC071915:61 ENST00000373570.8:73 BC094828:432 CU674168:432 KJ893256:432 KJ898381:432 DQ891363:432 DQ894543:432 CR456877:432 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance= | + | |distance=7 |
|distance_to_tss=47261 | |distance_to_tss=47261 | ||
|end=23635635 | |end=23635635 | ||
| Line 12: | Line 12: | ||
|entrez_id=4824 | |entrez_id=4824 | ||
|gc_percent=0.512438 | |gc_percent=0.512438 | ||
| − | |gene_alias=BAPX2 | + | |gene_alias=BAPX2{{!}}NKX3{{!}}NKX3.1{{!}}NKX3A |
|gene_description=NK3 homeobox 1 | |gene_description=NK3 homeobox 1 | ||
| − | |gene_id= | + | |gene_id=11224 |
| − | |gene_name= | + | |gene_name=ribosomal protein L35 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:10344 |
| − | |gene_symbol= | + | |gene_symbol=RPL35 |
| − | |gene_synonyms= | + | |gene_synonyms=L35 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:10344 |
|nearest_ensembl=ENSG00000167034 | |nearest_ensembl=ENSG00000167034 | ||
|nearest_promoter_id=NM_001256339 | |nearest_promoter_id=NM_001256339 | ||
|nearest_refseq=NM_006167 | |nearest_refseq=NM_006167 | ||
|nearest_unigene=Hs.55999 | |nearest_unigene=Hs.55999 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=23635620 | |start=23635620 | ||
|start_of_center_position=124861988 | |start_of_center_position=124861988 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000495728.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_243106.1 | |tss_id=hg_243106.1 | ||
Revision as of 16:31, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 124861988 |
|---|---|
| End of the center position in the TSS region: | 124861989 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000495728.1 |
|---|---|
| Distance: | 7 |
| Num_trans: | 20 |
| All_trans: | ENST00000495728.1:7 ENST00000629845.1:27 ENST00000348462.6:31 NM_007209:31 BC010919:31 D28448:31 AK291072:33 BC000348:43 ENST00000487431.1:52 ENST00000493018.5:53 U12465:60 BC071915:61 ENST00000373570.8:73 BC094828:432 CU674168:432 KJ893256:432 KJ898381:432 DQ891363:432 DQ894543:432 CR456877:432 |
TATA-Box annotation
| Distance to TSS: | 47261 |
|---|---|
| Nearest PromoterID: | NM_001256339 |
| Entrez ID: | 4824 |
| Nearest Unigene: | Hs.55999 |
| Nearest Refseq: | NM_006167 |
| Nearest Ensembl: | ENSG00000167034 |
| Gene Name: | ribosomal protein L35 |
| Gene Alias: | BAPX2|NKX3|NKX3.1|NKX3A |
| Gene Description: | NK3 homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.512438 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
