Difference between revisions of "TSS:Hg 243108.1"
From referenceTSS
| Line 2: | Line 2: | ||
|NF-M= | |NF-M= | ||
|NFM= | |NFM= | ||
| − | |all_trans= | + | |all_trans=AK307789:38 DQ892461:119 AB590437:119 KJ896906:119 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| − | |distance= | + | |distance=38 |
| − | |distance_to_tss=- | + | |distance_to_tss=-107 |
|end=24914880 | |end=24914880 | ||
|end_of_center_position=124938831 | |end_of_center_position=124938831 | ||
|entrez_id=4741 | |entrez_id=4741 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
| − | |gene_alias=NEF3 | + | |gene_alias=NEF3{{!}}NF-M{{!}}NFM |
|gene_description=neurofilament medium | |gene_description=neurofilament medium | ||
| − | |gene_id= | + | |gene_id=2800 |
| − | |gene_name= | + | |gene_name=golgin A1 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:4424 |
| − | |gene_symbol= | + | |gene_symbol=GOLGA1 |
| − | |gene_synonyms= | + | |gene_synonyms=MGC33154 golgin-97 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:4424 |
|nearest_ensembl=ENSG00000104722 | |nearest_ensembl=ENSG00000104722 | ||
|nearest_promoter_id=NM_001105541 | |nearest_promoter_id=NM_001105541 | ||
| Line 29: | Line 29: | ||
|start_of_center_position=124938830 | |start_of_center_position=124938830 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=AK307789 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243108.1 | |tss_id=hg_243108.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 16:31, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 124938830 |
|---|---|
| End of the center position in the TSS region: | 124938831 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK307789 |
|---|---|
| Distance: | 38 |
| Num_trans: | 4 |
| All_trans: | AK307789:38 DQ892461:119 AB590437:119 KJ896906:119 |
TATA-Box annotation
| Distance to TSS: | -107 |
|---|---|
| Nearest PromoterID: | NM_001105541 |
| Entrez ID: | 4741 |
| Nearest Unigene: | Hs.458657 |
| Nearest Refseq: | NM_005382 |
| Nearest Ensembl: | ENSG00000104722 |
| Gene Name: | golgin A1 |
| Gene Alias: | NEF3|NF-M|NFM |
| Gene Description: | neurofilament medium |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
