Difference between revisions of "TSS:Hg 243110.1"
From referenceTSS
| Line 2: | Line 2: | ||
|NF-M= | |NF-M= | ||
|NFM= | |NFM= | ||
| + | |all_trans=ENST00000679355.1:0 ENST00000681045.1:0 ENST00000681424.1:0 ENST00000681675.1:0 ENST00000681544.1:0 ENST00000680272.1:0 ENST00000680257.1:-11 ENST00000680032.1:-11 ENST00000681540.1:-11 ENST00000680234.1:-11 X87949:20 ENST00000679475.1:24 ENST00000680494.1:24 ENST00000681774.1:24 ENST00000324460.7:25 NM_005347:25 AK293604:25 ENST00000680640.1:26 BC020235:38 LP895631:38 AJ271729:229 EU794617:229 AF216292:242 DQ892173:242 DQ895368:242 AB527282:242 AF188611:298 | ||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=3661 |
|end=24918653 | |end=24918653 | ||
|end_of_center_position=125241370 | |end_of_center_position=125241370 | ||
|entrez_id=4741 | |entrez_id=4741 | ||
|gc_percent=0.41791 | |gc_percent=0.41791 | ||
| − | |gene_alias=NEF3 | + | |gene_alias=NEF3{{!}}NF-M{{!}}NFM |
|gene_description=neurofilament medium | |gene_description=neurofilament medium | ||
| − | |gene_name= | + | |gene_id=3309 |
| + | |gene_name=heat shock protein family A (Hsp70) member 5 | ||
| + | |gene_source=HGNC:5238 | ||
| + | |gene_symbol=HSPA5 | ||
| + | |gene_synonyms=BiP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:5238 | ||
|nearest_ensembl=ENSG00000104722 | |nearest_ensembl=ENSG00000104722 | ||
|nearest_promoter_id=NM_001105541 | |nearest_promoter_id=NM_001105541 | ||
|nearest_refseq=NM_005382 | |nearest_refseq=NM_005382 | ||
|nearest_unigene=Hs.458657 | |nearest_unigene=Hs.458657 | ||
| − | |num_trans= | + | |num_trans=27 |
|species=human | |species=human | ||
|start=24918642 | |start=24918642 | ||
|start_of_center_position=125241369 | |start_of_center_position=125241369 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000679355.1 ENST00000681045.1 ENST00000681424.1 ENST00000681675.1 ENST00000681544.1 ENST00000680272.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_243110.1 | |tss_id=hg_243110.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 16:31, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 125241369 |
|---|---|
| End of the center position in the TSS region: | 125241370 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000679355.1 ENST00000681045.1 ENST00000681424.1 ENST00000681675.1 ENST00000681544.1 ENST00000680272.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 27 |
| All_trans: | ENST00000679355.1:0 ENST00000681045.1:0 ENST00000681424.1:0 ENST00000681675.1:0 ENST00000681544.1:0 ENST00000680272.1:0 ENST00000680257.1:-11 ENST00000680032.1:-11 ENST00000681540.1:-11 ENST00000680234.1:-11 X87949:20 ENST00000679475.1:24 ENST00000680494.1:24 ENST00000681774.1:24 ENST00000324460.7:25 NM_005347:25 AK293604:25 ENST00000680640.1:26 BC020235:38 LP895631:38 AJ271729:229 EU794617:229 AF216292:242 DQ892173:242 DQ895368:242 AB527282:242 AF188611:298 |
TATA-Box annotation
| Distance to TSS: | 3661 |
|---|---|
| Nearest PromoterID: | NM_001105541 |
| Entrez ID: | 4741 |
| Nearest Unigene: | Hs.458657 |
| Nearest Refseq: | NM_005382 |
| Nearest Ensembl: | ENSG00000104722 |
| Gene Name: | heat shock protein family A (Hsp70) member 5 |
| Gene Alias: | NEF3|NF-M|NFM |
| Gene Description: | neurofilament medium |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.41791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
