Difference between revisions of "TSS:Hg 243171.1"
From referenceTSS
| Line 8: | Line 8: | ||
|RAM1= | |RAM1= | ||
|Ram-1= | |Ram-1= | ||
| − | |all_trans= | + | |all_trans=ENST00000312405.10:46 AJ519841:46 ENST00000460094.1:77 BC130580:79 BC144082:79 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=46 |
| − | |distance_to_tss= | + | |distance_to_tss=-172 |
|end=42501403 | |end=42501403 | ||
|end_of_center_position=135882943 | |end_of_center_position=135882943 | ||
|entrez_id=6575 | |entrez_id=6575 | ||
|gc_percent=0.383085 | |gc_percent=0.383085 | ||
| − | |gene_alias=GLVR-2 | + | |gene_alias=GLVR-2{{!}}GLVR2{{!}}IBGC1{{!}}IBGC3{{!}}MLVAR{{!}}PIT-2{{!}}PIT2{{!}}RAM1{{!}}Ram-1 |
|gene_description=solute carrier family 20 member 2 | |gene_description=solute carrier family 20 member 2 | ||
| − | |gene_id= | + | |gene_id=157922 |
| − | |gene_name= | + | |gene_name=calmodulin regulated spectrin associated protein 1 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:19946 |
| − | |gene_symbol= | + | |gene_symbol=CAMSAP1 |
| − | |gene_synonyms= | + | |gene_synonyms=DKFZp434F195 FLJ31228 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:19946 |
|nearest_ensembl=ENSG00000168575 | |nearest_ensembl=ENSG00000168575 | ||
|nearest_promoter_id=NM_001257180 | |nearest_promoter_id=NM_001257180 | ||
|nearest_refseq=NM_006749 | |nearest_refseq=NM_006749 | ||
|nearest_unigene=Hs.653173 | |nearest_unigene=Hs.653173 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=42501402 | |start=42501402 | ||
|start_of_center_position=135882942 | |start_of_center_position=135882942 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000312405.10 AJ519841 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_243171.1 | |tss_id=hg_243171.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q5T5Y3 |
}} | }} | ||
Revision as of 16:32, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 135882942 |
|---|---|
| End of the center position in the TSS region: | 135882943 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000312405.10 AJ519841 |
|---|---|
| Distance: | 46 |
| Num_trans: | 5 |
| All_trans: | ENST00000312405.10:46 AJ519841:46 ENST00000460094.1:77 BC130580:79 BC144082:79 |
TATA-Box annotation
| Distance to TSS: | -172 |
|---|---|
| Nearest PromoterID: | NM_001257180 |
| Entrez ID: | 6575 |
| Nearest Unigene: | Hs.653173 |
| Nearest Refseq: | NM_006749 |
| Nearest Ensembl: | ENSG00000168575 |
| Gene Name: | calmodulin regulated spectrin associated protein 1 |
| Gene Alias: | GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1 |
| Gene Description: | solute carrier family 20 member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.383085 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
