Difference between revisions of "TSS:Hg 243218.1"
From referenceTSS
| Line 5: | Line 5: | ||
|HAAH= | |HAAH= | ||
|JCTN= | |JCTN= | ||
| + | |all_trans=BC000524:-84 BC009427:-85 M20020:-86 J03537:-86 CU693282:-86 DQ891744:-86 KJ897500:-86 KJ897501:-86 DQ895025:-86 KJ905910:-86 AB529028:-86 | ||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=-84 |
| − | |distance_to_tss= | + | |distance_to_tss=5631 |
|end=61684185 | |end=61684185 | ||
|end_of_center_position=19379534 | |end_of_center_position=19379534 | ||
|entrez_id=444 | |entrez_id=444 | ||
|gc_percent=0.383085 | |gc_percent=0.383085 | ||
| − | |gene_alias=AAH | + | |gene_alias=AAH{{!}}BAH{{!}}CASQ2BP1{{!}}FDLAB{{!}}HAAH{{!}}JCTN{{!}}junctin |
|gene_description=aspartate beta-hydroxylase | |gene_description=aspartate beta-hydroxylase | ||
| − | |gene_name= | + | |gene_id=6194 |
| + | |gene_name=ribosomal protein S6 | ||
| + | |gene_source=HGNC:10429 | ||
| + | |gene_symbol=RPS6 | ||
| + | |gene_synonyms=S6 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:10429 | ||
|junctin= | |junctin= | ||
|nearest_ensembl=ENSG00000198363 | |nearest_ensembl=ENSG00000198363 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_032467 |
|nearest_refseq=NM_004318 | |nearest_refseq=NM_004318 | ||
|nearest_unigene=Hs.332422 | |nearest_unigene=Hs.332422 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=61684174 | |start=61684174 | ||
|start_of_center_position=19379533 | |start_of_center_position=19379533 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=BC000524 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_243218.1 | |tss_id=hg_243218.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 16:33, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 19379533 |
|---|---|
| End of the center position in the TSS region: | 19379534 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC000524 |
|---|---|
| Distance: | -84 |
| Num_trans: | 11 |
| All_trans: | BC000524:-84 BC009427:-85 M20020:-86 J03537:-86 CU693282:-86 DQ891744:-86 KJ897500:-86 KJ897501:-86 DQ895025:-86 KJ905910:-86 AB529028:-86 |
TATA-Box annotation
| Distance to TSS: | 5631 |
|---|---|
| Nearest PromoterID: | NM_032467 |
| Entrez ID: | 444 |
| Nearest Unigene: | Hs.332422 |
| Nearest Refseq: | NM_004318 |
| Nearest Ensembl: | ENSG00000198363 |
| Gene Name: | ribosomal protein S6 |
| Gene Alias: | AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin |
| Gene Description: | aspartate beta-hydroxylase |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.383085 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
