Difference between revisions of "TSS:Hg 243230.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=AY208841:12 AY208838:14 BC001628:14 AJ565853:-42 AJ565854:-42 AJ565855:-42 AJ575566:-42 AB603741:43 LF354211:58 MA589788:58 ENST00000673211.1:-179 ENST00000672615.1:-179 ENST00000673485.1:-179 ENST00000672476.1:-179 ENST00000673171.1:-179 ENST00000672152.1:-179 AK000164:-179 AY302067:-179 AY302068:-179 AY302069:-179 AY302070:-179 AY302071:-179 AY302072:-179 AY302073:-179 AY302074:-179 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance= | + | |distance=12 |
| − | |distance_to_tss= | + | |distance_to_tss=8549 |
|end=66676145 | |end=66676145 | ||
|end_of_center_position=32989909 | |end_of_center_position=32989909 | ||
| − | |entrez_id= | + | |entrez_id=56260 |
|gc_percent=0.348259 | |gc_percent=0.348259 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=chromosome 8 open reading frame 44 |
| − | |gene_id= | + | |gene_id=54840 |
| − | |gene_name= | + | |gene_name=aprataxin |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:15984 |
| − | |gene_symbol= | + | |gene_symbol=APTX |
| − | |gene_synonyms= | + | |gene_synonyms=AOA AOA1 EAOH EOAHA FLJ20157 |
| − | |gene_type= | + | |gene_type=ncRNA |
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:15984 |
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000213865 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_161217 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_019607 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.661238 |
| − | |num_trans= | + | |num_trans=25 |
|species=human | |species=human | ||
|start=66676144 | |start=66676144 | ||
|start_of_center_position=32989908 | |start_of_center_position=32989908 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-95(GCTTTTAGGGTG,+,0.00) |
| − | |transcript_name= | + | |transcript_name=AY208841 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_243230.1 | |tss_id=hg_243230.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 16:34, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 32989908 |
|---|---|
| End of the center position in the TSS region: | 32989909 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AY208841 |
|---|---|
| Distance: | 12 |
| Num_trans: | 25 |
| All_trans: | AY208841:12 AY208838:14 BC001628:14 AJ565853:-42 AJ565854:-42 AJ565855:-42 AJ575566:-42 AB603741:43 LF354211:58 MA589788:58 ENST00000673211.1:-179 ENST00000672615.1:-179 ENST00000673485.1:-179 ENST00000672476.1:-179 ENST00000673171.1:-179 ENST00000672152.1:-179 AK000164:-179 AY302067:-179 AY302068:-179 AY302069:-179 AY302070:-179 AY302071:-179 AY302072:-179 AY302073:-179 AY302074:-179 |
TATA-Box annotation
| Distance to TSS: | 8549 |
|---|---|
| Nearest PromoterID: | NR_161217 |
| Entrez ID: | 56260 |
| Nearest Unigene: | Hs.661238 |
| Nearest Refseq: | NM_019607 |
| Nearest Ensembl: | ENSG00000213865 |
| Gene Name: | aprataxin |
| Gene Alias: | - |
| Gene Description: | chromosome 8 open reading frame 44 |
| Gene Type: | ncRNA |
| CpG%: | 0 |
| GC%: | 0.348259 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -95(GCTTTTAGGGTG,+,0.00) |
