Difference between revisions of "TSS:Hg 243352.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000376434.5:-132 NM_001244961:-132 BC037253:-132 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| − | |distance= | + | |distance=-132 |
| − | |distance_to_tss= | + | |distance_to_tss=47 |
|end=99893662 | |end=99893662 | ||
|end_of_center_position=83331829 | |end_of_center_position=83331829 | ||
| Line 11: | Line 11: | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=cytochrome c oxidase subunit 6C | |gene_description=cytochrome c oxidase subunit 6C | ||
| − | |gene_id= | + | |gene_id=257019 |
| − | |gene_name= | + | |gene_name=FERM domain containing 3 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:24125 |
| − | |gene_symbol= | + | |gene_symbol=FRMD3 |
| − | |gene_synonyms= | + | |gene_synonyms=EPB41L4O MGC20553 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:24125 |
|nearest_ensembl=ENSG00000164919 | |nearest_ensembl=ENSG00000164919 | ||
|nearest_promoter_id=NM_004374 | |nearest_promoter_id=NM_004374 | ||
|nearest_refseq=NM_004374 | |nearest_refseq=NM_004374 | ||
|nearest_unigene=Hs.351875 | |nearest_unigene=Hs.351875 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=99893658 | |start=99893658 | ||
|start_of_center_position=83331828 | |start_of_center_position=83331828 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000376434.5 NM_001244961 BC037253 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243352.1 | |tss_id=hg_243352.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A2A2Y4 |
}} | }} | ||
Revision as of 16:36, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 83331828 |
|---|---|
| End of the center position in the TSS region: | 83331829 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000376434.5 NM_001244961 BC037253 |
|---|---|
| Distance: | -132 |
| Num_trans: | 3 |
| All_trans: | ENST00000376434.5:-132 NM_001244961:-132 BC037253:-132 |
TATA-Box annotation
| Distance to TSS: | 47 |
|---|---|
| Nearest PromoterID: | NM_004374 |
| Entrez ID: | 1345 |
| Nearest Unigene: | Hs.351875 |
| Nearest Refseq: | NM_004374 |
| Nearest Ensembl: | ENSG00000164919 |
| Gene Name: | FERM domain containing 3 |
| Gene Alias: | - |
| Gene Description: | cytochrome c oxidase subunit 6C |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
