Difference between revisions of "TSS:Hg 243353.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000621208.4:-6 NM_001244960:-6 AY137774:-13 |
|bA208F1.2= | |bA208F1.2= | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| − | |distance=- | + | |distance=-6 |
|distance_to_tss=85 | |distance_to_tss=85 | ||
|end=100352486 | |end=100352486 | ||
| Line 10: | Line 10: | ||
|entrez_id=54881 | |entrez_id=54881 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
| − | |gene_alias=Ipi1 | + | |gene_alias=Ipi1{{!}}bA208F1.2 |
|gene_description=testis expressed 10 | |gene_description=testis expressed 10 | ||
| − | |gene_id= | + | |gene_id=257019 |
| − | |gene_name= | + | |gene_name=FERM domain containing 3 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:24125 |
| − | |gene_symbol= | + | |gene_symbol=FRMD3 |
| − | |gene_synonyms= | + | |gene_synonyms=EPB41L4O MGC20553 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:24125 |
|nearest_ensembl=ENSG00000136891 | |nearest_ensembl=ENSG00000136891 | ||
|nearest_promoter_id=NM_001161584 | |nearest_promoter_id=NM_001161584 | ||
|nearest_refseq=NM_017746 | |nearest_refseq=NM_017746 | ||
|nearest_unigene=Hs.494648 | |nearest_unigene=Hs.494648 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=100352485 | |start=100352485 | ||
|start_of_center_position=83467735 | |start_of_center_position=83467735 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000621208.4 NM_001244960 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243353.1 | |tss_id=hg_243353.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A2A2Y4 |
}} | }} | ||
Revision as of 16:36, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 83467735 |
|---|---|
| End of the center position in the TSS region: | 83467736 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000621208.4 NM_001244960 |
|---|---|
| Distance: | -6 |
| Num_trans: | 3 |
| All_trans: | ENST00000621208.4:-6 NM_001244960:-6 AY137774:-13 |
TATA-Box annotation
| Distance to TSS: | 85 |
|---|---|
| Nearest PromoterID: | NM_001161584 |
| Entrez ID: | 54881 |
| Nearest Unigene: | Hs.494648 |
| Nearest Refseq: | NM_017746 |
| Nearest Ensembl: | ENSG00000136891 |
| Gene Name: | FERM domain containing 3 |
| Gene Alias: | Ipi1|bA208F1.2 |
| Gene Description: | testis expressed 10 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
