Difference between revisions of "TSS:Hg 243359.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000457156.5:0 BC025321:0 AB209562:-5 AK096385:-11 AK300744:-17 ENST00000376263.8:-18 NM_031263:-18 BC000355:18 AK307962:-19 AK294067:-47 ENST00000360384.9:-53 NM_001318188:-74 NM_001318187:-74 NM_001318186:-74 BC014980:-391 ENST00000483135.1:-398 ENST00000376281.8:-407 X72727:-407 AK291336:-407 ENST00000472778.5:-419 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=58341 | |distance_to_tss=58341 | ||
|end=104328571 | |end=104328571 | ||
| Line 10: | Line 11: | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=uncharacterized LOC105376194 | |gene_description=uncharacterized LOC105376194 | ||
| − | |gene_name= | + | |gene_id=3190 |
| + | |gene_name=heterogeneous nuclear ribonucleoprotein K | ||
| + | |gene_source=HGNC:5044 | ||
| + | |gene_symbol=HNRNPK | ||
| + | |gene_synonyms=CSBP TUNP | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:5044 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_135141 | |nearest_promoter_id=NR_135141 | ||
|nearest_refseq=NR_135141 | |nearest_refseq=NR_135141 | ||
|nearest_unigene=Hs.553289 | |nearest_unigene=Hs.553289 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=104328568 | |start=104328568 | ||
|start_of_center_position=83980190 | |start_of_center_position=83980190 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000457156.5 BC025321 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_243359.1 | |tss_id=hg_243359.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=Q5T6W2 | ||
}} | }} | ||
Revision as of 16:37, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 83980190 |
|---|---|
| End of the center position in the TSS region: | 83980191 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000457156.5 BC025321 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENST00000457156.5:0 BC025321:0 AB209562:-5 AK096385:-11 AK300744:-17 ENST00000376263.8:-18 NM_031263:-18 BC000355:18 AK307962:-19 AK294067:-47 ENST00000360384.9:-53 NM_001318188:-74 NM_001318187:-74 NM_001318186:-74 BC014980:-391 ENST00000483135.1:-398 ENST00000376281.8:-407 X72727:-407 AK291336:-407 ENST00000472778.5:-419 |
TATA-Box annotation
| Distance to TSS: | 58341 |
|---|---|
| Nearest PromoterID: | NR_135141 |
| Entrez ID: | 105376194 |
| Nearest Unigene: | Hs.553289 |
| Nearest Refseq: | NR_135141 |
| Nearest Ensembl: | |
| Gene Name: | heterogeneous nuclear ribonucleoprotein K |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC105376194 |
| Gene Type: | ncRNA |
| CpG%: | 0.02 |
| GC%: | 0.343284 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
