Difference between revisions of "TSS:Hg 243375.1"
From referenceTSS
| Line 4: | Line 4: | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=125 | |distance_to_tss=125 | ||
|end=109451259 | |end=109451259 | ||
| Line 10: | Line 10: | ||
|entrez_id=5774 | |entrez_id=5774 | ||
|gc_percent=0.472637 | |gc_percent=0.472637 | ||
| − | |gene_alias=PTP-H1 | + | |gene_alias=PTP-H1{{!}}PTPH1 |
| − | |gene_description= | + | |gene_description=protein tyrosine phosphatase non-receptor type 3 |
|gene_id=5774 | |gene_id=5774 | ||
| − | |gene_name= | + | |gene_name=PTPN3 |
|gene_source=HGNC:9655 | |gene_source=HGNC:9655 | ||
|gene_symbol=PTPN3 | |gene_symbol=PTPN3 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_002829 | |nearest_refseq=NM_002829 | ||
|nearest_unigene=Hs.436429 | |nearest_unigene=Hs.436429 | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
|start=109451258 | |start=109451258 | ||
|start_of_center_position=91101921 | |start_of_center_position=91101921 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-16(TCTTATAGAGCT,+,0.00) |
| − | |transcript_name= | + | |transcript_name= |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_243375.1 | |tss_id=hg_243375.1 | ||
Revision as of 16:37, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 91101921 |
|---|---|
| End of the center position in the TSS region: | 91101922 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | ENST00000412145.5:-125 ENST00000446349.5:-125 NM_001145370:-125 NM_001145369:-125 uc004beb.2:-125 uc004bec.2:-125 BX648253:-125 |
TATA-Box annotation
| Distance to TSS: | 125 |
|---|---|
| Nearest PromoterID: | NM_001145369 |
| Entrez ID: | 5774 |
| Nearest Unigene: | Hs.436429 |
| Nearest Refseq: | NM_002829 |
| Nearest Ensembl: | ENSG00000070159 |
| Gene Name: | PTPN3 |
| Gene Alias: | PTP-H1|PTPH1 |
| Gene Description: | protein tyrosine phosphatase non-receptor type 3 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.472637 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -16(TCTTATAGAGCT,+,0.00) |
