Difference between revisions of "TSS:Hg 243394.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=BC152919:117 AB527342:117 KY652974:118 KY652975:118 U59464:118 ENST00000421141.5:439 ENST00000547672.5:439 ENST00000546820.5:439 NM_001083605:439 NM_001083604:439 AB189438:439 AB189439:439 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| − | |distance= | + | |distance=117 |
| − | |distance_to_tss= | + | |distance_to_tss=169 |
|end=113410506 | |end=113410506 | ||
|end_of_center_position=95508479 | |end_of_center_position=95508479 | ||
| − | |entrez_id= | + | |entrez_id=54107 |
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
| − | |gene_alias= | + | |gene_alias=CHARAC17{{!}}CHRAC17{{!}}CHRAC2{{!}}YBL1{{!}}p17 |
| − | |gene_description= | + | |gene_description=DNA polymerase epsilon 3, accessory subunit |
| − | |gene_id= | + | |gene_id=5727 |
| − | |gene_name= | + | |gene_name=patched 1 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:9585 |
| − | |gene_symbol= | + | |gene_symbol=PTCH1 |
| − | |gene_synonyms= | + | |gene_synonyms=BCNS |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:9585 |
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000148229 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_027261 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_017443 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.108112 |
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=113410505 | |start=113410505 | ||
|start_of_center_position=95508478 | |start_of_center_position=95508478 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=BC152919 AB527342 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243394.1 | |tss_id=hg_243394.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 16:37, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 95508478 |
|---|---|
| End of the center position in the TSS region: | 95508479 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC152919 AB527342 |
|---|---|
| Distance: | 117 |
| Num_trans: | 12 |
| All_trans: | BC152919:117 AB527342:117 KY652974:118 KY652975:118 U59464:118 ENST00000421141.5:439 ENST00000547672.5:439 ENST00000546820.5:439 NM_001083605:439 NM_001083604:439 AB189438:439 AB189439:439 |
TATA-Box annotation
| Distance to TSS: | 169 |
|---|---|
| Nearest PromoterID: | NR_027261 |
| Entrez ID: | 54107 |
| Nearest Unigene: | Hs.108112 |
| Nearest Refseq: | NM_017443 |
| Nearest Ensembl: | ENSG00000148229 |
| Gene Name: | patched 1 |
| Gene Alias: | CHARAC17|CHRAC17|CHRAC2|YBL1|p17 |
| Gene Description: | DNA polymerase epsilon 3, accessory subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
