Difference between revisions of "TSS:Hg 243420.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=LF317167:-83 MA552744:-83 LF205159:-491 MA440736:-491 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| − | |distance= | + | |distance=-83 |
|distance_to_tss=-33530 | |distance_to_tss=-33530 | ||
|end=117214731 | |end=117214731 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.606965 | |gc_percent=0.606965 | ||
|gene_alias=U70C | |gene_alias=U70C | ||
| − | |gene_description= | + | |gene_description=small nucleolar RNA, H/ACA box 70C |
|gene_id=23245 | |gene_id=23245 | ||
| − | |gene_name= | + | |gene_name=SNORA70C |
|gene_source=HGNC:17021 | |gene_source=HGNC:17021 | ||
|gene_symbol=ASTN2 | |gene_symbol=ASTN2 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NR_003708 | |nearest_refseq=NR_003708 | ||
|nearest_unigene=Hs.693445 | |nearest_unigene=Hs.693445 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=117214730 | |start=117214730 | ||
|start_of_center_position=11135 | |start_of_center_position=11135 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF317167 MA552744 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_243420.1 | |tss_id=hg_243420.1 | ||
Revision as of 16:38, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 11135 |
|---|---|
| End of the center position in the TSS region: | 11136 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF317167 MA552744 |
|---|---|
| Distance: | -83 |
| Num_trans: | 4 |
| All_trans: | LF317167:-83 MA552744:-83 LF205159:-491 MA440736:-491 |
TATA-Box annotation
| Distance to TSS: | -33530 |
|---|---|
| Nearest PromoterID: | NR_003708 |
| Entrez ID: | 100124538 |
| Nearest Unigene: | Hs.693445 |
| Nearest Refseq: | NR_003708 |
| Nearest Ensembl: | ENSG00000207268 |
| Gene Name: | SNORA70C |
| Gene Alias: | U70C |
| Gene Description: | small nucleolar RNA, H/ACA box 70C |
| Gene Type: | snoRNA |
| CpG%: | 0.06 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
