Difference between revisions of "TSS:Hg 243516.1"
From referenceTSS
| Line 3: | Line 3: | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=56 | |distance_to_tss=56 | ||
|end=136118375 | |end=136118375 | ||
| Line 9: | Line 9: | ||
|entrez_id=90120 | |entrez_id=90120 | ||
|gc_percent=0.791045 | |gc_percent=0.791045 | ||
| − | |gene_alias= | + | |gene_alias=C9orf69 |
| − | |gene_description= | + | |gene_description=transmembrane protein 250 |
|gene_id=90120 | |gene_id=90120 | ||
| − | |gene_name= | + | |gene_name=TMEM250 |
|gene_source=HGNC:31009 | |gene_source=HGNC:31009 | ||
|gene_symbol=C9orf69 | |gene_symbol=C9orf69 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_152833 | |nearest_refseq=NM_152833 | ||
|nearest_unigene=Hs.287411 | |nearest_unigene=Hs.287411 | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
|start=136118374 | |start=136118374 | ||
|start_of_center_position=2485 | |start_of_center_position=2485 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name= |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243516.1 | |tss_id=hg_243516.1 | ||
Revision as of 16:40, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 2485 |
|---|---|
| End of the center position in the TSS region: | 2486 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | ENST00000561457.2:-56 NM_001256526:-56 uc031tfs.1:-56 ENST00000448040.2:-63 uc064xax.1:-63 ENST00000447934.1:101 uc064xaw.1:101 ENST00000557985.2:-159 uc064xav.1:-159 BC092490:-159 BC111053:-215 BC014304:-407 BC013282:-449 AK023162:-464 AK091349:-469 ENST00000418388.5:-488 uc004cgx.6:-488 BC021231:-488 |
TATA-Box annotation
| Distance to TSS: | 56 |
|---|---|
| Nearest PromoterID: | NM_001256526 |
| Entrez ID: | 90120 |
| Nearest Unigene: | Hs.287411 |
| Nearest Refseq: | NM_152833 |
| Nearest Ensembl: | ENSG00000238227 |
| Gene Name: | TMEM250 |
| Gene Alias: | C9orf69 |
| Gene Description: | transmembrane protein 250 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.791045 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
