Difference between revisions of "TSS:Hg 42215.1"
From referenceTSS
| Line 2: | Line 2: | ||
|MSCCA= | |MSCCA= | ||
|PRO2195= | |PRO2195= | ||
| − | |all_trans=ENST00000464962.6:0 ENST00000635541.1:0 ENST00000635375.1:0 ENST00000635292 | + | |all_trans=ENST00000464962.6:0 ENST00000635541.1:0 ENST00000635375.1:0 ENST00000635292.1:0 AK293260:0 ENST00000634425.1:15 ENST00000636669.1:39 ENST00000636018.1:39 BC016634:43 JF432294:-192 AB385024:-192 CU674766:-192 BC001567:-195 BC000394:-197 X76013:-197 BC029739:-198 ENST00000470619.6:-211 ENST00000635194.1:-211 AK297987:-212 AK300220:-212 ENST00000306125.12:-216 ENST00000430182.5:-216 ENST00000634802.1:-216 ENST00000634602.1:-216 ENST00000635052.1:-216 ENST00000418549.3:-216 ENST00000634724.1:-216 ENST00000635278.1:-216 NM_005051:-216 NR_073590:-216 NM_001272073:-216 AK056815:-216 AK290523:-216 AK222510:-216 ENST00000414533.5:-217 ENST00000494767.2:-217 ENST00000634609.1:-217 AK301559:-217 ENST00000417025.2:-218 ENST00000635494.1:-218 ENST00000482438.2:-218 ENST00000635443.1:-219 ENST00000452739.5:-219 ENST00000634953.1:-219 ENST00000635231.1:-222 ENST00000482261.7:-268 JN104585:-320 |
|chr=chr3 | |chr=chr3 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=257 |
|end=49104541 | |end=49104541 | ||
|end_of_center_position=49104500 | |end_of_center_position=49104500 | ||
|entrez_id=5859 | |entrez_id=5859 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
| − | |gene_alias=GLNRS | + | |gene_alias=GLNRS{{!}}MSCCA{{!}}PRO2195 |
|gene_description=glutaminyl-tRNA synthetase | |gene_description=glutaminyl-tRNA synthetase | ||
|gene_id=5859 | |gene_id=5859 | ||
| − | |gene_name=glutaminyl-tRNA synthetase | + | |gene_name=glutaminyl-tRNA synthetase 1 |
|gene_source=HGNC:9751 | |gene_source=HGNC:9751 | ||
| − | |gene_symbol= | + | |gene_symbol=QARS1 |
|gene_synonyms= | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:9751 | |hgnc_mgi_id=HGNC:9751 | ||
|nearest_ensembl=ENSG00000172053 | |nearest_ensembl=ENSG00000172053 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_073590 |
|nearest_refseq=NM_005051 | |nearest_refseq=NM_005051 | ||
|nearest_unigene=Hs.79322 | |nearest_unigene=Hs.79322 | ||
| − | |num_trans= | + | |num_trans=47 |
|species=human | |species=human | ||
|start=49104458 | |start=49104458 | ||
|start_of_center_position=49104499 | |start_of_center_position=49104499 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000464962.6 ENST00000635541.1 ENST00000635375.1 ENST00000635292 | + | |transcript_name=ENST00000464962.6 ENST00000635541.1 ENST00000635375.1 ENST00000635292.1 AK293260 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_42215.1 | |tss_id=hg_42215.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B4DDN1 | + | |uniprot_id=A0A0U1RQL2 A0A0U1RR66 B4DDN1 |
}} | }} | ||
Revision as of 23:51, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 49104499 |
|---|---|
| End of the center position in the TSS region: | 49104500 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000464962.6 ENST00000635541.1 ENST00000635375.1 ENST00000635292.1 AK293260 |
|---|---|
| Distance: | 0 |
| Num_trans: | 47 |
| All_trans: | ENST00000464962.6:0 ENST00000635541.1:0 ENST00000635375.1:0 ENST00000635292.1:0 AK293260:0 ENST00000634425.1:15 ENST00000636669.1:39 ENST00000636018.1:39 BC016634:43 JF432294:-192 AB385024:-192 CU674766:-192 BC001567:-195 BC000394:-197 X76013:-197 BC029739:-198 ENST00000470619.6:-211 ENST00000635194.1:-211 AK297987:-212 AK300220:-212 ENST00000306125.12:-216 ENST00000430182.5:-216 ENST00000634802.1:-216 ENST00000634602.1:-216 ENST00000635052.1:-216 ENST00000418549.3:-216 ENST00000634724.1:-216 ENST00000635278.1:-216 NM_005051:-216 NR_073590:-216 NM_001272073:-216 AK056815:-216 AK290523:-216 AK222510:-216 ENST00000414533.5:-217 ENST00000494767.2:-217 ENST00000634609.1:-217 AK301559:-217 ENST00000417025.2:-218 ENST00000635494.1:-218 ENST00000482438.2:-218 ENST00000635443.1:-219 ENST00000452739.5:-219 ENST00000634953.1:-219 ENST00000635231.1:-222 ENST00000482261.7:-268 JN104585:-320 |
TATA-Box annotation
| Distance to TSS: | 257 |
|---|---|
| Nearest PromoterID: | NR_073590 |
| Entrez ID: | 5859 |
| Nearest Unigene: | Hs.79322 |
| Nearest Refseq: | NM_005051 |
| Nearest Ensembl: | ENSG00000172053 |
| Gene Name: | glutaminyl-tRNA synthetase 1 |
| Gene Alias: | GLNRS|MSCCA|PRO2195 |
| Gene Description: | glutaminyl-tRNA synthetase |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
