Difference between revisions of "TSS:Hg 53378.1"
From referenceTSS
| Line 4: | Line 4: | ||
|PP3105= | |PP3105= | ||
|ZIP8= | |ZIP8= | ||
| − | |all_trans=ENST00000394833.6 | + | |all_trans=ENST00000394833.6:-56 AB040120:-56 NM_022154:-108 ENST00000424970.6:-122 AK304274:-122 NM_001135147:-170 ENST00000514000.5:-354 AF193052:-366 BC012125:-391 ENST00000356736.5:-399 ENST00000512657.5:-399 NM_001135146:-399 DQ892212:401 KJ894532:401 DQ895407:401 CU680230:401 |
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| Line 13: | Line 13: | ||
|entrez_id=64116 | |entrez_id=64116 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias=BIGM103 | + | |gene_alias=BIGM103{{!}}CDG2N{{!}}LZT-Hs6{{!}}PP3105{{!}}ZIP8 |
|gene_description=solute carrier family 39 member 8 | |gene_description=solute carrier family 39 member 8 | ||
|gene_id=64116 | |gene_id=64116 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_022154 | |nearest_refseq=NM_022154 | ||
|nearest_unigene=Hs.288034 | |nearest_unigene=Hs.288034 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=102345062 | |start=102345062 | ||
|start_of_center_position=102345072 | |start_of_center_position=102345072 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000394833.6 | + | |transcript_name=ENST00000394833.6 AB040120 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_53378.1 | |tss_id=hg_53378.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A0A024RDG0 | + | |uniprot_id=A0A024RDG0 |
}} | }} | ||
Revision as of 04:10, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 102345072 |
|---|---|
| End of the center position in the TSS region: | 102345073 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000394833.6 AB040120 |
|---|---|
| Distance: | -56 |
| Num_trans: | 16 |
| All_trans: | ENST00000394833.6:-56 AB040120:-56 NM_022154:-108 ENST00000424970.6:-122 AK304274:-122 NM_001135147:-170 ENST00000514000.5:-354 AF193052:-366 BC012125:-391 ENST00000356736.5:-399 ENST00000512657.5:-399 NM_001135146:-399 DQ892212:401 KJ894532:401 DQ895407:401 CU680230:401 |
TATA-Box annotation
| Distance to TSS: | 118 |
|---|---|
| Nearest PromoterID: | NM_022154 |
| Entrez ID: | 64116 |
| Nearest Unigene: | Hs.288034 |
| Nearest Refseq: | NM_022154 |
| Nearest Ensembl: | ENSG00000138821 |
| Gene Name: | solute carrier family 39 member 8 |
| Gene Alias: | BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 |
| Gene Description: | solute carrier family 39 member 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
