Difference between revisions of "TSS:Hg 53379.1"
From referenceTSS
| Line 4: | Line 4: | ||
|PP3105= | |PP3105= | ||
|ZIP8= | |ZIP8= | ||
| − | |all_trans=ENST00000424970.6 | + | |all_trans=ENST00000424970.6:0 AK304274:0 NM_022154:8 NM_001135147:-39 ENST00000394833.6:60 AB040120:60 ENST00000514000.5:-223 AF193052:-235 BC012125:-260 ENST00000356736.5:-268 ENST00000512657.5:-268 NM_001135146:-268 |
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| Line 13: | Line 13: | ||
|entrez_id=64116 | |entrez_id=64116 | ||
|gc_percent=0.522388 | |gc_percent=0.522388 | ||
| − | |gene_alias=BIGM103 | + | |gene_alias=BIGM103{{!}}CDG2N{{!}}LZT-Hs6{{!}}PP3105{{!}}ZIP8 |
|gene_description=solute carrier family 39 member 8 | |gene_description=solute carrier family 39 member 8 | ||
|gene_id=64116 | |gene_id=64116 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_022154 | |nearest_refseq=NM_022154 | ||
|nearest_unigene=Hs.288034 | |nearest_unigene=Hs.288034 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=102345198 | |start=102345198 | ||
|start_of_center_position=102345206 | |start_of_center_position=102345206 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-70(CCCTTTAAACGC,+,0.00) |
| − | |transcript_name=ENST00000424970.6 | + | |transcript_name=ENST00000424970.6 AK304274 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_53379.1 | |tss_id=hg_53379.1 | ||
Revision as of 04:10, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 102345206 |
|---|---|
| End of the center position in the TSS region: | 102345207 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000424970.6 AK304274 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | ENST00000424970.6:0 AK304274:0 NM_022154:8 NM_001135147:-39 ENST00000394833.6:60 AB040120:60 ENST00000514000.5:-223 AF193052:-235 BC012125:-260 ENST00000356736.5:-268 ENST00000512657.5:-268 NM_001135146:-268 |
TATA-Box annotation
| Distance to TSS: | -15 |
|---|---|
| Nearest PromoterID: | NM_022154 |
| Entrez ID: | 64116 |
| Nearest Unigene: | Hs.288034 |
| Nearest Refseq: | NM_022154 |
| Nearest Ensembl: | ENSG00000138821 |
| Gene Name: | solute carrier family 39 member 8 |
| Gene Alias: | BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 |
| Gene Description: | solute carrier family 39 member 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.522388 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -70(CCCTTTAAACGC,+,0.00) |
