Difference between revisions of "TSS:Hg 70897.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=NR_160977:0 NR_160978:0 NR_160980:0 ENST00000654049.1:28 ENST00000486232.2:31 ENST00000666927.1:34 ENST00000653976.1:34 ENST00000659187.1:35 ENST00000663769.1:35 ENST00000663950.1:47 ENST00000655791.1:47 ENST00000663340.1:79 ENST00000658761.1:90 ENST00000367072.5:90 ENST00000367073.6:138 ENST00000650421.1:167 NR_160976:209 NR_160981:209 NR_160982:209 ENST00000643288.2:318 |
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=2 |
|end=158869820 | |end=158869820 | ||
|end_of_center_position=158869816 | |end_of_center_position=158869816 | ||
|entrez_id=100130967 | |entrez_id=100130967 | ||
|gc_percent=0.751244 | |gc_percent=0.751244 | ||
| − | |gene_alias= | + | |gene_alias=- |
|gene_description=chromosome 6 open reading frame 99 | |gene_description=chromosome 6 open reading frame 99 | ||
|gene_id=100130967 | |gene_id=100130967 | ||
| − | |gene_name= | + | |gene_name=long intergenic non-protein coding RNA 2901 |
|gene_source=HGNC:21179 | |gene_source=HGNC:21179 | ||
| − | |gene_symbol= | + | |gene_symbol=LINC02901 |
|gene_synonyms=yR211F11.1 | |gene_synonyms=yR211F11.1 | ||
| − | |gene_type= | + | |gene_type=ncRNA |
|hgnc_mgi_id=HGNC:21179 | |hgnc_mgi_id=HGNC:21179 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_160978 |
|nearest_refseq=NM_001195032 | |nearest_refseq=NM_001195032 | ||
|nearest_unigene=Hs.32804 | |nearest_unigene=Hs.32804 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=158869811 | |start=158869811 | ||
|start_of_center_position=158869815 | |start_of_center_position=158869815 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-37(CGCCATATAAAA,-,0.00),-35(CCATATAAAAGC,-,0.00) |
| − | |transcript_name= | + | |transcript_name=NR_160977 NR_160978 NR_160980 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_70897.1 | |tss_id=hg_70897.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 10:59, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 158869815 |
|---|---|
| End of the center position in the TSS region: | 158869816 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NR_160977 NR_160978 NR_160980 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | NR_160977:0 NR_160978:0 NR_160980:0 ENST00000654049.1:28 ENST00000486232.2:31 ENST00000666927.1:34 ENST00000653976.1:34 ENST00000659187.1:35 ENST00000663769.1:35 ENST00000663950.1:47 ENST00000655791.1:47 ENST00000663340.1:79 ENST00000658761.1:90 ENST00000367072.5:90 ENST00000367073.6:138 ENST00000650421.1:167 NR_160976:209 NR_160981:209 NR_160982:209 ENST00000643288.2:318 |
TATA-Box annotation
| Distance to TSS: | 2 |
|---|---|
| Nearest PromoterID: | NR_160978 |
| Entrez ID: | 100130967 |
| Nearest Unigene: | Hs.32804 |
| Nearest Refseq: | NM_001195032 |
| Nearest Ensembl: | |
| Gene Name: | long intergenic non-protein coding RNA 2901 |
| Gene Alias: | - |
| Gene Description: | chromosome 6 open reading frame 99 |
| Gene Type: | ncRNA |
| CpG%: | 0.155 |
| GC%: | 0.751244 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -37(CGCCATATAAAA,-,0.00),-35(CCATATAAAAGC,-,0.00) |
