Difference between revisions of "TSS:Hg 78616.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000297001. | + | |all_trans=ENST00000297001.7:0 NM_001161834:0 |
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=-224 | |distance_to_tss=-224 | ||
|end=50095887 | |end=50095887 | ||
| Line 9: | Line 9: | ||
|entrez_id=100130988 | |entrez_id=100130988 | ||
|gc_percent=0.348259 | |gc_percent=0.348259 | ||
| − | |gene_alias= | + | |gene_alias=C7orf72 |
| − | |gene_description= | + | |gene_description=spermatogenesis associated 48 |
|gene_id=100130988 | |gene_id=100130988 | ||
| − | |gene_name= | + | |gene_name=spermatogenesis associated 48 |
|gene_source=HGNC:22564 | |gene_source=HGNC:22564 | ||
| − | |gene_symbol= | + | |gene_symbol=SPATA48 |
|gene_synonyms= | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_001161834 | |nearest_refseq=NM_001161834 | ||
|nearest_unigene=Hs.99248 | |nearest_unigene=Hs.99248 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=50095837 | |start=50095837 | ||
|start_of_center_position=50095862 | |start_of_center_position=50095862 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=56(TGCCTTAAAAAG,-,0.00),58(CCTTAAAAAGAA,+,0.00) |
| − | |transcript_name=ENST00000297001. | + | |transcript_name=ENST00000297001.7 NM_001161834 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_78616.1 | |tss_id=hg_78616.1 | ||
Revision as of 13:59, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 50095862 |
|---|---|
| End of the center position in the TSS region: | 50095863 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000297001.7 NM_001161834 |
|---|---|
| Distance: | 0 |
| Num_trans: | 2 |
| All_trans: | ENST00000297001.7:0 NM_001161834:0 |
TATA-Box annotation
| Distance to TSS: | -224 |
|---|---|
| Nearest PromoterID: | NM_001161834 |
| Entrez ID: | 100130988 |
| Nearest Unigene: | Hs.99248 |
| Nearest Refseq: | NM_001161834 |
| Nearest Ensembl: | ENSG00000164500 |
| Gene Name: | spermatogenesis associated 48 |
| Gene Alias: | C7orf72 |
| Gene Description: | spermatogenesis associated 48 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.348259 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 56(TGCCTTAAAAAG,-,0.00),58(CCTTAAAAAGAA,+,0.00) |
