Difference between revisions of "TSS:Hg 78883.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|RAP1= | |RAP1= | ||
| − | |all_trans=ENST00000607882.5:0 | + | |all_trans=ENST00000607882.5:0 NM_001367745:0 NM_001367738:0 NM_001367746:0 NR_104676:0 NM_001367731:0 NM_001367729:0 NM_001367730:0 NM_001367740:0 NM_001367733:0 NM_001367732:0 NM_001287060:0 NM_001367723:0 AK056864:0 |
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-2 |
|end=66682172 | |end=66682172 | ||
|end_of_center_position=66682165 | |end_of_center_position=66682165 | ||
|entrez_id=27342 | |entrez_id=27342 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
| − | |gene_alias=RABEX5 | + | |gene_alias=RABEX5{{!}}RAP1{{!}}rabex-5 |
|gene_description=RAB guanine nucleotide exchange factor 1 | |gene_description=RAB guanine nucleotide exchange factor 1 | ||
|gene_id=27342 | |gene_id=27342 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:17676 | |hgnc_mgi_id=HGNC:17676 | ||
|nearest_ensembl=ENSG00000154710 | |nearest_ensembl=ENSG00000154710 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001367732 |
|nearest_refseq=NM_014504 | |nearest_refseq=NM_014504 | ||
|nearest_unigene=Hs.530053 | |nearest_unigene=Hs.530053 | ||
| − | |num_trans= | + | |num_trans=14 |
|rabex-5= | |rabex-5= | ||
|species=human | |species=human | ||
| Line 29: | Line 29: | ||
|start_of_center_position=66682164 | |start_of_center_position=66682164 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000607882.5 | + | |transcript_name=ENST00000607882.5 NM_001367745 NM_001367738 NM_001367746 NR_104676 NM_001367731 NM_001367729 NM_001367730 NM_001367740 NM_001367733 NM_001367732 NM_001287060 NM_001367723 AK056864 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_78883.1 | |tss_id=hg_78883.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=V9GYI8 | + | |uniprot_id=Q9UJ41 V9GYI8 |
}} | }} | ||
Revision as of 14:05, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 66682164 |
|---|---|
| End of the center position in the TSS region: | 66682165 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000607882.5 NM_001367745 NM_001367738 NM_001367746 NR_104676 NM_001367731 NM_001367729 NM_001367730 NM_001367740 NM_001367733 NM_001367732 NM_001287060 NM_001367723 AK056864 |
|---|---|
| Distance: | 0 |
| Num_trans: | 14 |
| All_trans: | ENST00000607882.5:0 NM_001367745:0 NM_001367738:0 NM_001367746:0 NR_104676:0 NM_001367731:0 NM_001367729:0 NM_001367730:0 NM_001367740:0 NM_001367733:0 NM_001367732:0 NM_001287060:0 NM_001367723:0 AK056864:0 |
TATA-Box annotation
| Distance to TSS: | -2 |
|---|---|
| Nearest PromoterID: | NM_001367732 |
| Entrez ID: | 27342 |
| Nearest Unigene: | Hs.530053 |
| Nearest Refseq: | NM_014504 |
| Nearest Ensembl: | ENSG00000154710 |
| Gene Name: | RAB guanine nucleotide exchange factor 1 |
| Gene Alias: | RABEX5|RAP1|rabex-5 |
| Gene Description: | RAB guanine nucleotide exchange factor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
