Difference between revisions of "TSS:Hg 78886.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|RAP1= | |RAP1= | ||
| − | |all_trans=BC015330:0 ENST00000442563.5:22 ENST00000450873.6:22 ENST00000284957.9:22 | + | |all_trans=BC015330:0 ENST00000442563.5:22 ENST00000450873.6:22 ENST00000284957.9:22 NM_001367742:22 NM_001287062:22 NM_001367744:22 NM_001367736:22 NM_001367735:22 NM_001367756:22 NM_001367755:22 NM_001367754:22 NM_001367753:22 NM_001367751:22 NM_001367749:22 NM_001367750:22 NM_001367748:22 NM_001367747:22 NM_014504:22 NR_160287:22 NM_001367743:22 NM_001367739:22 NM_001367734:22 NM_001367724:22 AK223329:22 AK290678:22 AJ250042:22 |
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-35 |
|end=66740711 | |end=66740711 | ||
|end_of_center_position=66740698 | |end_of_center_position=66740698 | ||
|entrez_id=27342 | |entrez_id=27342 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
| − | |gene_alias=RABEX5 | + | |gene_alias=RABEX5{{!}}RAP1{{!}}rabex-5 |
|gene_description=RAB guanine nucleotide exchange factor 1 | |gene_description=RAB guanine nucleotide exchange factor 1 | ||
|gene_id=27342 | |gene_id=27342 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:17676 | |hgnc_mgi_id=HGNC:17676 | ||
|nearest_ensembl=ENSG00000154710 | |nearest_ensembl=ENSG00000154710 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001367744 |
|nearest_refseq=NM_014504 | |nearest_refseq=NM_014504 | ||
|nearest_unigene=Hs.530053 | |nearest_unigene=Hs.530053 | ||
| − | |num_trans= | + | |num_trans=27 |
|rabex-5= | |rabex-5= | ||
|species=human | |species=human | ||
Revision as of 14:05, 18 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 66740697 |
|---|---|
| End of the center position in the TSS region: | 66740698 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC015330 |
|---|---|
| Distance: | 0 |
| Num_trans: | 27 |
| All_trans: | BC015330:0 ENST00000442563.5:22 ENST00000450873.6:22 ENST00000284957.9:22 NM_001367742:22 NM_001287062:22 NM_001367744:22 NM_001367736:22 NM_001367735:22 NM_001367756:22 NM_001367755:22 NM_001367754:22 NM_001367753:22 NM_001367751:22 NM_001367749:22 NM_001367750:22 NM_001367748:22 NM_001367747:22 NM_014504:22 NR_160287:22 NM_001367743:22 NM_001367739:22 NM_001367734:22 NM_001367724:22 AK223329:22 AK290678:22 AJ250042:22 |
TATA-Box annotation
| Distance to TSS: | -35 |
|---|---|
| Nearest PromoterID: | NM_001367744 |
| Entrez ID: | 27342 |
| Nearest Unigene: | Hs.530053 |
| Nearest Refseq: | NM_014504 |
| Nearest Ensembl: | ENSG00000154710 |
| Gene Name: | RAB guanine nucleotide exchange factor 1 |
| Gene Alias: | RABEX5|RAP1|rabex-5 |
| Gene Description: | RAB guanine nucleotide exchange factor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
