Difference between revisions of "TSS:Hg 79085.1"
From referenceTSS
| Line 5: | Line 5: | ||
|WBSCR5= | |WBSCR5= | ||
|WSCR5= | |WSCR5= | ||
| − | |all_trans=ENST00000361082.7:0 ENST00000488266.5:0 | + | |all_trans=ENST00000361082.7:0 ENST00000275635.11:0 ENST00000488266.5:0 ENST00000460943.6:0 NM_014146:0 NM_032464:0 NM_032463:0 AF161531:0 AF252611:0 AF252612:0 AF252614:0 AK225150:0 AK290916:0 AK290074:0 AF252613:1 ENST00000470709.1:3 ENST00000398475.5:-17 BC006080:-17 AK002099:-31 ENST00000475494.5:-44 BC001609:-53 ENST00000491595.1:-71 LF384044:-241 MA619621:-241 |
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=3 |
|end=74210020 | |end=74210020 | ||
|end_of_center_position=74210009 | |end_of_center_position=74210009 | ||
|entrez_id=7462 | |entrez_id=7462 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
| − | |gene_alias=HSPC046 | + | |gene_alias=HSPC046{{!}}LAB{{!}}NTAL{{!}}WBSCR15{{!}}WBSCR5{{!}}WSCR5 |
| − | |gene_description=linker for activation of T | + | |gene_description=linker for activation of T cells family member 2 |
|gene_id=7462 | |gene_id=7462 | ||
| − | |gene_name=linker for activation of T | + | |gene_name=linker for activation of T cells family member 2 |
|gene_source=HGNC:12749 | |gene_source=HGNC:12749 | ||
|gene_symbol=LAT2 | |gene_symbol=LAT2 | ||
| Line 24: | Line 24: | ||
|hgnc_mgi_id=HGNC:12749 | |hgnc_mgi_id=HGNC:12749 | ||
|nearest_ensembl=ENSG00000086730 | |nearest_ensembl=ENSG00000086730 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_032464 |
|nearest_refseq=NM_014146 | |nearest_refseq=NM_014146 | ||
|nearest_unigene=Hs.741249 | |nearest_unigene=Hs.741249 | ||
| − | |num_trans= | + | |num_trans=24 |
|species=human | |species=human | ||
|start=74209997 | |start=74209997 | ||
|start_of_center_position=74210008 | |start_of_center_position=74210008 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000361082.7 | + | |transcript_name=ENST00000361082.7 ENST00000275635.11 ENST00000488266.5 ENST00000460943.6 NM_014146 NM_032464 NM_032463 AF161531 AF252611 AF252612 AF252614 AK225150 AK290916 AK290074 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_79085.1 | |tss_id=hg_79085.1 | ||
Revision as of 14:10, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 74210008 |
|---|---|
| End of the center position in the TSS region: | 74210009 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000361082.7 ENST00000275635.11 ENST00000488266.5 ENST00000460943.6 NM_014146 NM_032464 NM_032463 AF161531 AF252611 AF252612 AF252614 AK225150 AK290916 AK290074 |
|---|---|
| Distance: | 0 |
| Num_trans: | 24 |
| All_trans: | ENST00000361082.7:0 ENST00000275635.11:0 ENST00000488266.5:0 ENST00000460943.6:0 NM_014146:0 NM_032464:0 NM_032463:0 AF161531:0 AF252611:0 AF252612:0 AF252614:0 AK225150:0 AK290916:0 AK290074:0 AF252613:1 ENST00000470709.1:3 ENST00000398475.5:-17 BC006080:-17 AK002099:-31 ENST00000475494.5:-44 BC001609:-53 ENST00000491595.1:-71 LF384044:-241 MA619621:-241 |
TATA-Box annotation
| Distance to TSS: | 3 |
|---|---|
| Nearest PromoterID: | NM_032464 |
| Entrez ID: | 7462 |
| Nearest Unigene: | Hs.741249 |
| Nearest Refseq: | NM_014146 |
| Nearest Ensembl: | ENSG00000086730 |
| Gene Name: | linker for activation of T cells family member 2 |
| Gene Alias: | HSPC046|LAB|NTAL|WBSCR15|WBSCR5|WSCR5 |
| Gene Description: | linker for activation of T cells family member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
