Difference between revisions of "TSS:Hg 82823.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000405358.8:29 | + | |all_trans=ENST00000405358.8:29 LF332455:-128 MA568032:-128 U17163:-139 EU446473:-140 AB463032:-140 KJ891126:-144 ENST00000460438.5:-190 ENST00000476355.5:389 BC106762:-499 BC106763:-499 |
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance=29 | |distance=29 | ||
| − | |distance_to_tss= | + | |distance_to_tss=759 |
|end=13988913 | |end=13988913 | ||
|end_of_center_position=13988908 | |end_of_center_position=13988908 | ||
| Line 12: | Line 12: | ||
|gene_description=ETS variant 1 | |gene_description=ETS variant 1 | ||
|gene_id=2115 | |gene_id=2115 | ||
| − | |gene_name=ETS variant 1 | + | |gene_name=ETS variant transcription factor 1 |
|gene_source=HGNC:3490 | |gene_source=HGNC:3490 | ||
|gene_symbol=ETV1 | |gene_symbol=ETV1 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:3490 | |hgnc_mgi_id=HGNC:3490 | ||
|nearest_ensembl=ENSG00000006468 | |nearest_ensembl=ENSG00000006468 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001370556 |
|nearest_refseq=NM_004956 | |nearest_refseq=NM_004956 | ||
|nearest_unigene=Hs.22634 | |nearest_unigene=Hs.22634 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=13988901 | |start=13988901 | ||
|start_of_center_position=13988907 | |start_of_center_position=13988907 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000405358.8 | + | |transcript_name=ENST00000405358.8 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_82823.1 | |tss_id=hg_82823.1 | ||
Revision as of 15:37, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 13988907 |
|---|---|
| End of the center position in the TSS region: | 13988908 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000405358.8 |
|---|---|
| Distance: | 29 |
| Num_trans: | 11 |
| All_trans: | ENST00000405358.8:29 LF332455:-128 MA568032:-128 U17163:-139 EU446473:-140 AB463032:-140 KJ891126:-144 ENST00000460438.5:-190 ENST00000476355.5:389 BC106762:-499 BC106763:-499 |
TATA-Box annotation
| Distance to TSS: | 759 |
|---|---|
| Nearest PromoterID: | NM_001370556 |
| Entrez ID: | 2115 |
| Nearest Unigene: | Hs.22634 |
| Nearest Refseq: | NM_004956 |
| Nearest Ensembl: | ENSG00000006468 |
| Gene Name: | ETS variant transcription factor 1 |
| Gene Alias: | ER81 |
| Gene Description: | ETS variant 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.482587 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
