Difference between revisions of "TSS:Hg 85443.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000480514. | + | |all_trans=ENST00000480514.6:0 ENST00000485614.5:0 ENST00000486180.5:0 NM_001355530:0 NM_001355526:0 BC105284:0 BC062748:0 NM_001355531:-41 NM_001355529:-41 NM_001355527:-41 ENST00000460135.1:-189 |
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=17 |
|end=105581501 | |end=105581501 | ||
|end_of_center_position=105581477 | |end_of_center_position=105581477 | ||
| Line 16: | Line 16: | ||
|gene_symbol=EFCAB10 | |gene_symbol=EFCAB10 | ||
|gene_synonyms= | |gene_synonyms= | ||
| − | |gene_type= | + | |gene_type=protein-coding |
|hgnc_mgi_id=HGNC:34531 | |hgnc_mgi_id=HGNC:34531 | ||
|nearest_ensembl=ENSG00000185055 | |nearest_ensembl=ENSG00000185055 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001355530 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_001355526 |
|nearest_unigene=Hs.719432 | |nearest_unigene=Hs.719432 | ||
|num_trans=11 | |num_trans=11 | ||
| Line 27: | Line 27: | ||
|start_of_center_position=105581476 | |start_of_center_position=105581476 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000480514. | + | |transcript_name=ENST00000480514.6 ENST00000485614.5 ENST00000486180.5 NM_001355530 NM_001355526 BC105284 BC062748 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_85443.1 | |tss_id=hg_85443.1 | ||
Revision as of 16:38, 18 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 105581476 |
|---|---|
| End of the center position in the TSS region: | 105581477 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000480514.6 ENST00000485614.5 ENST00000486180.5 NM_001355530 NM_001355526 BC105284 BC062748 |
|---|---|
| Distance: | 0 |
| Num_trans: | 11 |
| All_trans: | ENST00000480514.6:0 ENST00000485614.5:0 ENST00000486180.5:0 NM_001355530:0 NM_001355526:0 BC105284:0 BC062748:0 NM_001355531:-41 NM_001355529:-41 NM_001355527:-41 ENST00000460135.1:-189 |
TATA-Box annotation
| Distance to TSS: | 17 |
|---|---|
| Nearest PromoterID: | NM_001355530 |
| Entrez ID: | 100130771 |
| Nearest Unigene: | Hs.719432 |
| Nearest Refseq: | NM_001355526 |
| Nearest Ensembl: | ENSG00000185055 |
| Gene Name: | EF-hand calcium binding domain 10 |
| Gene Alias: | - |
| Gene Description: | EF-hand calcium binding domain 10 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
